Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g1837 ATGTTGTGTGCTCCAGAGGAGATGGCTGGCCAAAATTCAAGTGTATTTTATGAAACTCTACAAAATTCAACGCCGAACTCACTAATCCAGTGCTGTTCATTGAACCTCAATGACCAAACTCGTATCATGGATGGGATATCTGTGCTTTCTGGTTCTCAAGTGCATGGTGCATCTGGAAGCAATGTGAATGTCCACCTGATAAATCCTGGAATTATTGATTCTAATGCATTTTTTTCATCCAAAGGAAAGAACATTATTAGATATGCCTCACAGGGAACTTCTTCATGTCCCAGAAATAACGGTGGGTTTCAAGAGCAAACAGCTTCCCCTGCTTCACTTTCTGGCATTCTTGCTGCTAGAATTGGTCATCAAGAAAATTTAGAGAAATCACAAGTTTTATCTCCTTCATTCGGTTCACTGGACTCATTGGGACCTTACATGTTAGAAAATTGGTCTTATGCTCCAAGCCATTTGCCTTTAACTCATGGCTACAACAATAATGTGCCTAATGTAAACTTGGATTCAAATGGATGGGCCTCATCATCAAATGTTACAATCTTGAGCAGCCTTGCTTATGGTTCATCCAATTTCTGTAATGAACCTGTATTAAGCCTTGCAACATCTCCAACAACAGTCCAGTTCTCAGAAGTGAGTTGTTCTGATCAAGTTACCCATTGCTTCAGTAAAACAAGGTCAGGCTTGGAACTTGCCTCTTGCAGCAACAGGGAGCCTGCCATGAGTTTGAACAACTCTGCTGGTAGACACTTTCATTCTTCTCAAGCAATGTTAGGATCAAGATACCTTACTGGAATTCAAGAAATACTCGCTCAACTTGCAAGATTCTCACTTGAGAATCTTGAACAGGTTAGATATTCACAAGCAAGTTCTATGCTCAATCTCAACATGGAAGCTCCTTTGCCAATACATGCAGCTGAATCAAACAAGTCCCAGCTGCTGACCCTCTTAGAACTGGTGGACAGCCGTTATAATCAGTGTCTGGATGAGATCCATACTGTTGTTTCTGCATTCCATGCTGCTACTGAGTTGGACCCACGAGTTCATGTTCATTTTGCTCTTCAAACAATCTTTCTCTTATACAAGAACTTGCGAAACAGGATTAGCAGTTACATTCTTGCCATGGGGCCACCGGATATGGACAGTTTGAGCGCAGTGGACAAGGAAGGATCTATTGATCCTTCACTCATTCATAAGCAATTGTCTCTCCAAACGTTGAAACGAAAAGATCATCAATTATGGAGGCCCCCAAGGGGTTTGCCAGAAAACTCTGTCTCAATCTTACGAGCCTGGATGTTTCAGAACTTTCTCCATCCGTATCCTAAGGATTCGGAGAAGCATTTACTTGCATTGAAAGCAGGTTTGACCAGAAACCAGGTATCTAACTGGTTTATAAATGCTCGTGTTCGGCTATGGAAACCCATGATTGAGGAAATGTACGCTGAACTGAATCGTAAAAGAAAGGCTAGTCGAAATGAAGGGGAAGCCGAGAGCAGCAGTCATGGAAGGCTTGGGCGATAA 1536 0.4212 MLCAPEEMAGQNSSVFYETLQNSTPNSLIQCCSLNLNDQTRIMDGISVLSGSQVHGASGSNVNVHLINPGIIDSNAFFSSKGKNIIRYASQGTSSCPRNNGGFQEQTASPASLSGILAARIGHQENLEKSQVLSPSFGSLDSLGPYMLENWSYAPSHLPLTHGYNNNVPNVNLDSNGWASSSNVTILSSLAYGSSNFCNEPVLSLATSPTTVQFSEVSCSDQVTHCFSKTRSGLELASCSNREPAMSLNNSAGRHFHSSQAMLGSRYLTGIQEILAQLARFSLENLEQVRYSQASSMLNLNMEAPLPIHAAESNKSQLLTLLELVDSRYNQCLDEIHTVVSAFHAATELDPRVHVHFALQTIFLLYKNLRNRISSYILAMGPPDMDSLSAVDKEGSIDPSLIHKQLSLQTLKRKDHQLWRPPRGLPENSVSILRAWMFQNFLHPYPKDSEKHLLALKAGLTRNQVSNWFINARVRLWKPMIEEMYAELNRKRKASRNEGEAESSSHGRLGR 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g1837 511 Pfam Associated with HOX 263 374 IPR006563 -
Acco10g1837 511 Pfam Homeobox KN domain 436 475 IPR008422 GO:0003677|GO:0006355
Acco10g1837 511 CDD homeodomain 419 480 IPR001356 GO:0003677
Acco10g1837 511 MobiDBLite consensus disorder prediction 490 511 - -
Acco10g1837 511 SMART HOX_1 419 483 IPR001356 GO:0003677
Acco10g1837 511 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 175 501 - -
Acco10g1837 511 ProSiteProfiles 'Homeobox' domain profile. 438 479 IPR001356 GO:0003677
Acco10g1837 511 SUPERFAMILY Homeodomain-like 422 487 IPR009057 -
Acco10g1837 511 SMART prehox3 256 375 IPR006563 -
Acco10g1837 511 Gene3D - 423 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g1837 Acco-ChrAcco10 31360403 31362607 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g1837 199 492 Homeobox Transcription Factor Family AT4G32980 50.160 2.00e-92 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Acco10g1837 POX 1.1e-19 No_clan