Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g1823 ATGGAGGGATATAGTAACCAGGTGAGCGTAAATACAGGTTCAAGGCCTAATTTCCTGTACTCTTTTGCTACAGTTGGAGGTCCAAGCGTGGGAAACCAAAACCTTCATCAGTCGTCGCCCAGCACTAACTTTCATCTTCAGTCAGGTGGATCGGAATGCTATGAATCTGTGAAAAACGAAGCCAACAACTCCAATAATCATCACTCTCAGATTTTCCAATATCATCCTTTGATCAATAGTCATGGAGGAAGCCAAACCTCTAACGAAGAACTTGAATCTCTTAAAGCTAAAATCATTGCTCATCCTCACTATTCCAACCTTTTGGAAGCTTACATGAACTGCCACAAGGTAGGAGCTTCGCCGGAAGTGGTGGCGCATCTCACTGCGGCAAAGCAAGAGTTCGAGGCACGGCAGCGATCTTCGGTCAGATCCAGGGACACTTGCAAGGATCCAGAACTTGACCGATTTATGGAAGCTTACTATAACCTGCTTGTGAAGTATGGGGAGGAATTGACAAGGCCATTTCTAGATGCAATGGATTTCATACGCAACACCGAAGCTCAGCTTAATATGCTTTGTGATGGACCAGTGCGCATTTTCCCTGAAGAAAAGGGCGAGGGCCATGCGGATTCATCTGAAGAGGATCAAGAGAATAGTGGAGGAGAAGCAGAAATGGCCGGAATTGATCCTCGAGCTGAAGATCGTGAGCTTAAGAACCACTTGCTAAGAAAGTATAGTGGGTGCTTGGGGAGCCTGAAGCAAGAACTTTCAAAGACAAAGAAGAAAGGAAAACTGCCAAAAGATGCCAGGCAAAAGCTTCTTAACTGGTGGGAATTACACTACAAATGGCCCTATCCTTCGGAATCAGAGAAGCTGGCATTGGCAGAATCAACAGGGTTAGACCAGAAGCAAATAAACAACTGGTTCATAAATCAAAGGAAGCGACACTGGAAGCCATCAGAAGACATGCAATTTATGGTTATGGAAGGCCTTCATCCACTGAATCCCCTTCATTATATGGACGCCCACTACATGCCTGATGCTCACTACCGTCTGGGACCATGA 1065 0.4554 MEGYSNQVSVNTGSRPNFLYSFATVGGPSVGNQNLHQSSPSTNFHLQSGGSECYESVKNEANNSNNHHSQIFQYHPLINSHGGSQTSNEELESLKAKIIAHPHYSNLLEAYMNCHKVGASPEVVAHLTAAKQEFEARQRSSVRSRDTCKDPELDRFMEAYYNLLVKYGEELTRPFLDAMDFIRNTEAQLNMLCDGPVRIFPEEKGEGHADSSEEDQENSGGEAEMAGIDPRAEDRELKNHLLRKYSGCLGSLKQELSKTKKKGKLPKDARQKLLNWWELHYKWPYPSESEKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMEGLHPLNPLHYMDAHYMPDAHYRLGP 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g1823 354 SMART KNOX2_2 143 194 IPR005541 GO:0003677|GO:0005634
Acco10g1823 354 SMART ELK_2 236 257 IPR005539 GO:0003677
Acco10g1823 354 SMART KNOX1_2 92 136 IPR005540 GO:0003677|GO:0005634
Acco10g1823 354 ProSitePatterns 'Homeobox' domain signature. 294 317 IPR017970 GO:0000981|GO:0006355
Acco10g1823 354 Gene3D - 261 323 - -
Acco10g1823 354 FunFam Homeobox protein knotted-1-like 2 261 323 - -
Acco10g1823 354 Pfam KNOX2 domain 147 193 IPR005541 GO:0003677|GO:0005634
Acco10g1823 354 CDD homeodomain 268 320 IPR001356 GO:0003677
Acco10g1823 354 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 87 325 - -
Acco10g1823 354 Pfam KNOX1 domain 94 135 IPR005540 GO:0003677|GO:0005634
Acco10g1823 354 ProSiteProfiles ELK domain profile. 236 256 IPR005539 GO:0003677
Acco10g1823 354 Pfam Homeobox KN domain 276 315 IPR008422 GO:0003677|GO:0006355
Acco10g1823 354 SUPERFAMILY Homeodomain-like 258 330 IPR009057 -
Acco10g1823 354 ProSiteProfiles 'Homeobox' domain profile. 256 319 IPR001356 GO:0003677
Acco10g1823 354 Pfam ELK domain 236 257 IPR005539 GO:0003677
Acco10g1823 354 MobiDBLite consensus disorder prediction 202 230 - -
Acco10g1823 354 SMART HOX_1 258 323 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g1823 Acco-ChrAcco10 31267145 31270229 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g1823 56 354 Homeobox Transcription Factor Family AT4G08150 64.918 6.39e-130 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Acco10g1823 KNOX2 2.9e-20 No_clan