Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g1804 ATGACTCTGCATCGGCCGTCTTCCGGTGGTAGCGCCTTGGTGCTCGATCTAGAAACTGCCGTGAAAGGCGGCGTTTTGGACGGCAAAGCTGCTCTACCCGGTAATGGTTGCAGCGACGGTGACAAAATAGATCTGAAGGTGTTGATTGAAGTGCTGGAGTCAGTTGAAGTGCCCTCTGTGTTCGTCTGTCCAATCTCGTTAGAGCCTATGCGAGAGCCTGTGACCATTTGCACGGGTCAGACCTATGACAGATCCAACATCCTCAAATGGTTCGCTCTGGGTCATAATACTTGCCCCACAACGATGCAGGAGCTTTGGGACGATTCAGTGACGTTGAACAGGACTCTCGGCCAATTAATCCATAGTTGGTTCTCGCAGAAGTACCTCTCATTGAATAAGCAGTTCCAGGATGTGCAGGGAAGAGCCCTGGAGCTCTTAGAGACACTCAAGAAGGTGAAGGGTCAAGCCAGAGTTCAAGCCCTTCGAGATCTCAGGCAGATTGTTACAACCCATGTGTCCACAAGGAAGTCAGTTGTAGAAAATGGAGGGCTTGCTTTAATTTCTTCTTTACTGGGTCCTTTCACTTCCCACGCAGTTGGGTCAGAAGCAATTGGGATTCTAGTGAACTTGGATTTGAATTCAGAGTCGAAGAGAAATCTGATGCTCCCAGCAAAGATATCTTTGTTGGTTGATGTTATGAACGAAGGAACGATTGAGACCAAGATGAACTGTGCCAAATTGATTGAAGTATTGTTAATGGAAGTGAATGAATCGGAGACGGAAATTTTGTCAAGCTTGAGTCTTTTGGTTGGATTATTGAGGCTAGTGAGGGATAAGAAACACCCAAGTGGGGTCTTAACAGGACTCATGTTACTGAAGACAATCTGTTCCCATGAATCGGTGAGAAGCTCCATGGTAAGCCTAGGAGCAGTTGCTCAGTTGATTGAGCTTCTTCCAAGTTTAAACCACGATTGCCTAGAGGTAGCTCTGTCCATTCTAGAGGTATTGTCGACTATTCCTGAGGGAACACTGGCATTGAAAGAGAGCCCGAACATTATACCAAATGTGGTGAAGTTAATGATGAGAGTATCAGAGAGTAGCACTCAATTTGCGTTGTCAATATTGTGGGCTATCTACAAGCTTGCTCCTGAAGAATGTGCTTCGCAGGCGGTGGAGGCTGGTTTAGCTCCCAAGTTGCTGCTTGTGATTCAGAGTGGTTGCAACCCAGTGTTAAAGCAGATGTCTACTGAGTTCTTAAAAATGTGCAGTCTTAATTACTCCACTAGTCTTTTGATTTCTAAATGTATGCTCACCAGAACAATACGATGA 1329 0.4582 MTLHRPSSGGSALVLDLETAVKGGVLDGKAALPGNGCSDGDKIDLKVLIEVLESVEVPSVFVCPISLEPMREPVTICTGQTYDRSNILKWFALGHNTCPTTMQELWDDSVTLNRTLGQLIHSWFSQKYLSLNKQFQDVQGRALELLETLKKVKGQARVQALRDLRQIVTTHVSTRKSVVENGGLALISSLLGPFTSHAVGSEAIGILVNLDLNSESKRNLMLPAKISLLVDVMNEGTIETKMNCAKLIEVLLMEVNESETEILSSLSLLVGLLRLVRDKKHPSGVLTGLMLLKTICSHESVRSSMVSLGAVAQLIELLPSLNHDCLEVALSILEVLSTIPEGTLALKESPNIIPNVVKLMMRVSESSTQFALSILWAIYKLAPEECASQAVEAGLAPKLLLVIQSGCNPVLKQMSTEFLKMCSLNYSTSLLISKCMLTRTIR 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g1804 442 SUPERFAMILY RING/U-box 54 127 - -
Acco10g1804 442 SUPERFAMILY ARM repeat 145 425 IPR016024 -
Acco10g1804 442 CDD RING-Ubox_PUB 58 110 IPR045210 -
Acco10g1804 442 SMART Ubox_2 60 123 IPR003613 GO:0004842|GO:0016567
Acco10g1804 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 133 IPR013083 -
Acco10g1804 442 PANTHER WDSAM1 PROTEIN 55 429 IPR045185 GO:0061630
Acco10g1804 442 Gene3D - 134 436 IPR011989 -
Acco10g1804 442 ProSiteProfiles U-box domain profile. 56 130 IPR003613 GO:0004842|GO:0016567
Acco10g1804 442 Pfam U-box domain 57 127 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g1804 Acco-ChrAcco10 31090563 31091891 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g1804 9 442 U-box Gene Family AT3G49810 61.060 0.0 519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco10g1804 10 31090563 31091891 Acco10g1804 10 31090563 31091891 ECH