LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco10g1793	ATGGAAAGCTCACACATCCCTCTTCCCCCTTTTCCCTATCCTTTTTTTCTTCCTCAATTTCTTCCTTTAATTTCTTCTTCCCCTCAGATTGTCTGCTTCAGTATGGCATTTGCAGGAACAACCCAGAAATGCATGGCCTGTGAGAAAACAGTTTATCTGGTTGATAAGTTAACTGCAGATAACCGAGTGTACCACAAGGCTTGCTTCCGATGCCATCATTGTAAAGGAACCCTTAAGCTTAGCAACTACAATTCTTTCGAGGGAGTTCTGTACTGCAAGCCACACTTCGACCAATTGTTCAAAAGAACCGGCAGCCTTGAGAAAAGCTTCGAAGGGACACCAAAAATTGCTAAACCAGAAAAAAGCATTGATAATGAGAAGCCTGCAGTGACCAAAGTGTCAAGTATGTTTGGTGGAACCAGGGAGAAATGTGCTGGTTGTCAGAAAACAGCTTATCCCACGGAGAGGGTTACTGTGAATGGAACTCCATACCATAAGAGTTGTTTCAAATGTTGCCATGGAGGGTGTGTTATAAGTCCCTCCAACTACATTGCACATGAGGGCAAACTCTACTGCAAACATCACCATACCCAGCTGATCAAGGAAAAGGGCAATTTGAGCCAGCTTGAAGGTGACCGCGACAAGAGTACTGTGCTTGATAAAATTACTGATGAACAAGTTGCCGCCCTCACTTAG	696	0.4397	MESSHIPLPPFPYPFFLPQFLPLISSSPQIVCFSMAFAGTTQKCMACEKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCKPHFDQLFKRTGSLEKSFEGTPKIAKPEKSIDNEKPAVTKVSSMFGGTREKCAGCQKTAYPTERVTVNGTPYHKSCFKCCHGGCVISPSNYIAHEGKLYCKHHHTQLIKEKGNLSQLEGDRDKSTVLDKITDEQVAALT	231

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco10g1793	231	SMART	lim_4	143	195	IPR001781	-
	Acco10g1793	231	SMART	lim_4	43	95	IPR001781	-
	Acco10g1793	231	FunFam	LIM domain and actin-binding 1	138	208	-	-
	Acco10g1793	231	CDD	LIM2_SF3	144	204	-	-
	Acco10g1793	231	ProSitePatterns	LIM zinc-binding domain signature.	44	78	IPR001781	-
	Acco10g1793	231	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	70	110	-	-
	Acco10g1793	231	Gene3D	Cysteine Rich Protein	139	208	-	-
	Acco10g1793	231	Gene3D	Cysteine Rich Protein	38	108	-	-
	Acco10g1793	231	FunFam	LIM domain and actin-binding 1	38	108	-	-
	Acco10g1793	231	CDD	LIM1_SF3	40	102	-	-
	Acco10g1793	231	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	37	69	-	-
	Acco10g1793	231	Pfam	LIM domain	44	98	IPR001781	-
	Acco10g1793	231	Pfam	LIM domain	144	198	IPR001781	-
	Acco10g1793	231	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	170	209	-	-
	Acco10g1793	231	ProSiteProfiles	LIM domain profile.	42	102	IPR001781	-
	Acco10g1793	231	ProSiteProfiles	LIM domain profile.	142	202	IPR001781	-
	Acco10g1793	231	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	136	169	-	-
	Acco10g1793	231	PANTHER	OS06G0237300 PROTEIN	37	127	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco10g1793	Acco-ChrAcco10	31005629	31008184	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	LIM	Acco10g1793		LIM	2.6e-11	CL0167

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Acco05g2010	05	36471931	36473583	Acco10g1793	10	31005629	31008184	CCT
	Acco10g1793	10	31005629	31008184	Acco10g1793	10	31005629	31008184	ECH