Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g1784 ATGAGTGTAAGGAATGGAAGGTTGCTGATTGCAATTGTATCACTCCTTAATTCGGGTGATTGGGGTGGACTGGCAAAAGTTTCAGAATTATCTTCCGGGATTGTCCATGACTCTGGAGACGCTTCTTGCCGGATAAGTGGCACTGTTCCTTCTTTGAAGCTCTACTTGCTTGTTGTGGTGTATGTTTGGCATGGGGAATCCCGATCGAAGCTGGTAGACAGCCTTTCTGATCGATCTTCTCGGGCTGTTTGGGTATCTCCACCGCCGGAAGTGGTGAAGTTTAATGTAGGGGGGTCTCGTAGCGACTCACACTTGTGGAGAGTGATAGTAGTGAAGTTATTCAACTTCTACATTCCGGATTATTCTGTGCTGGTTGAGATTCAACAAATGATGCTTCGTGACTGGGAGGTAGAACTGGTTCTTTGTGCTCGTGAAGCCAACTCCGTGGCAGATGCAATGGCAGTTGATTTGTTGATTGTAGGCTCACCATCGGATCATGTTCGTTCCTTGCTGGTGTTTCATCGTGAGGGATCTTCCTTGTTTGTAATTTCTGATTCTAACCTCATTATAAACCCACCATCCCACCCTCACTCTTACTCAACTCACCTACATCCATACCATCAACACTCTTACCACAAAGCTCAAATTTTCTCTTTCTCTCTGGTTCAGTCTTCTATTAGTCTGAGGCTATTATCAAGAGATCAGAATCACATGGCCCTGGAAGCTATGAAGTCACCCACCGCCGCTGGCCCCTCCTTCCCCTTCCAACCCTCCGATCTCCACCACCTGGAGCCGTGCCCCTGGACCAAGCGTAAGCGTTCCAAGCGTACCCGCCTCGACGAATCCGCCTGCTCCGAGGAAGAGTACCTCGCCCTCTGCCTCATCATGCTCGCTCGCGGCTCCACCAGTTCCACCCCCCCACATGACCGCCGTGCCTCGCCGGCTCCCAAGCTCGCTTACAAGTGTTCCGTCTGCAACAAAGCCTTCTCCTCTTACCAAGCTCTTGGCGGACACAAGGCCAGCCATCGTAAACTCGCTGGTGAGGATCACAACTCTTCTTCCAACGTCACCAGTAGTGCTTCTGCCTCCACCTCTGCATCCAACGGTGGGAGTAGGCTCCACGAGTGTTCAATCTGTCATAAGTCCTTCCCTACCGGACAGGCCTTGGGCGGACACAAGCGTCGCCACTACGAGGGTGGCGCCAGCAGCAGTGTTGCCACCATCGCCTCTGAGGGTGTGGGATCCGCCAACCGCGATTTCGATCTGAACATCCCCGCCTTCTCCTTGACGGTCGACGAGGAGGTGGAGAGCCCTCACCCACTGAAGAAGCCCCGCCTTTCCATGATGACCAACGATGGAATCCTTCAGCAAGTGAATTAA 1380 0.5232 MSVRNGRLLIAIVSLLNSGDWGGLAKVSELSSGIVHDSGDASCRISGTVPSLKLYLLVVVYVWHGESRSKLVDSLSDRSSRAVWVSPPPEVVKFNVGGSRSDSHLWRVIVVKLFNFYIPDYSVLVEIQQMMLRDWEVELVLCAREANSVADAMAVDLLIVGSPSDHVRSLLVFHREGSSLFVISDSNLIINPPSHPHSYSTHLHPYHQHSYHKAQIFSFSLVQSSISLRLLSRDQNHMALEAMKSPTAAGPSFPFQPSDLHHLEPCPWTKRKRSKRTRLDESACSEEEYLALCLIMLARGSTSSTPPHDRRASPAPKLAYKCSVCNKAFSSYQALGGHKASHRKLAGEDHNSSSNVTSSASASTSASNGGSRLHECSICHKSFPTGQALGGHKRRHYEGGASSSVATIASEGVGSANRDFDLNIPAFSLTVDEEVESPHPLKKPRLSMMTNDGILQQVN 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g1784 459 SMART c2h2final6 374 396 IPR013087 -
Acco10g1784 459 SMART c2h2final6 320 342 IPR013087 -
Acco10g1784 459 SUPERFAMILY beta-beta-alpha zinc fingers 320 396 IPR036236 -
Acco10g1784 459 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 273 426 IPR044653 GO:0003700
Acco10g1784 459 Gene3D Classic Zinc Finger 318 396 - -
Acco10g1784 459 MobiDBLite consensus disorder prediction 350 368 - -
Acco10g1784 459 MobiDBLite consensus disorder prediction 438 459 - -
Acco10g1784 459 Pfam C2H2-type zinc finger 319 344 - -
Acco10g1784 459 Pfam C2H2-type zinc finger 374 397 - -
Acco10g1784 459 ProSitePatterns Zinc finger C2H2 type domain signature. 376 396 IPR013087 -
Acco10g1784 459 MobiDBLite consensus disorder prediction 341 368 - -
Acco10g1784 459 ProSiteProfiles Zinc finger C2H2 type domain profile. 320 342 IPR013087 -
Acco10g1784 459 ProSiteProfiles Zinc finger C2H2 type domain profile. 374 396 IPR013087 -
Acco10g1784 459 ProSitePatterns Zinc finger C2H2 type domain signature. 322 342 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g1784 Acco-ChrAcco10 30933070 30937128 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g1784 238 448 C2H2 Transcription Factor Family AT1G27730 50.427 1.47e-50 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco10g1784 zf-C2H2_6 5.1e-12 CL0361