LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco10g1737	ATGATGAGGAACAAGGCGGAGAAGAGAAAGCAAGATGAATCGAGACAGAAACCGTACAGAGGGATTAGGATGAGGAAGTGGGGAAAGTGGGTGGCGGAGATCAGAGAACCCAACAAGAGGTCGAGGCTGTGGCTGGGGTCTTACACCACTCCGATGGCCGCCGCTCGCGCTTACGACACAGCCGTTTTCTATCTCAGAGGTCCTTCTGCTCGCCTCAACTTCCCCGAATTGTTATTCCAAGGCGACGACGGCGACGTCGTTCAGGGCCACAACATGTCCCCCGATTCCATTCGCAAAAGGGCCACCGAAGTCGGCGCAAGAGTTGACGCCCTCCAAGCCTCTCTTCACCATCACTCCGATTCTCACGCCCAAACCCCCTCCGACAAGCCCGACTTGAATGAGTTCCCCAGGCCCGAAGATCTTGTTGATGATTACAATTAG	441	0.551	MMRNKAEKRKQDESRQKPYRGIRMRKWGKWVAEIREPNKRSRLWLGSYTTPMAAARAYDTAVFYLRGPSARLNFPELLFQGDDGDVVQGHNMSPDSIRKRATEVGARVDALQASLHHHSDSHAQTPSDKPDLNEFPRPEDLVDDYN	146

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco10g1737	146	SMART	rav1_2	18	81	IPR001471	GO:0003700\|GO:0006355
	Acco10g1737	146	Gene3D	AP2/ERF domain	17	76	IPR036955	GO:0003700\|GO:0006355
	Acco10g1737	146	MobiDBLite	consensus disorder prediction	113	146	-	-
	Acco10g1737	146	ProSiteProfiles	AP2/ERF domain profile.	18	75	IPR001471	GO:0003700\|GO:0006355
	Acco10g1737	146	MobiDBLite	consensus disorder prediction	108	146	-	-
	Acco10g1737	146	CDD	AP2	19	77	IPR001471	GO:0003700\|GO:0006355
	Acco10g1737	146	Pfam	AP2 domain	19	67	IPR001471	GO:0003700\|GO:0006355
	Acco10g1737	146	SUPERFAMILY	DNA-binding domain	18	76	IPR016177	GO:0003677
	Acco10g1737	146	FunFam	Ethylene-responsive transcription factor 2	17	76	-	-
	Acco10g1737	146	PRINTS	Ethylene responsive element binding protein signature	19	30	IPR001471	GO:0003700\|GO:0006355
	Acco10g1737	146	PRINTS	Ethylene responsive element binding protein signature	57	77	IPR001471	GO:0003700\|GO:0006355
	Acco10g1737	146	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED	4	141	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco10g1737	Acco-ChrAcco10	30590517	30590957	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco10g1737	15	144	AP2-EREBP Transcription Factor Family	AT3G50260	57.554	1.23e-50	157

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Acco10g1737		AP2	5.1e-11	CL0081