Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g1730 ATGCAAGGGACAAGGGGTAGGATAGGTTCCTTGCCTGAAACATTGGAATTTGATTGTGGTTCTACTTCAAGTAATGTTACTATGGATCAGCAGCAGATTTGCTGGGATGGCATGAGGAACCCTATGGAAAATCAAATGCCTTCATTTATGATTTCACCTGGTGGTATCAACCCATTGTATGCAAATTCAATTGACCATGGATGGAAGAGCGTGAATAATTGGAGAATTGGTGAACCAAGTTCCAGTGGTTCACATATTCAAATTAACAATGATGAGCAGAAAAGAGAATTTGGATGGTCATCTTCTACAAGTGCTGATGCTGTTGTCGGTTCAAGATTAGAGCGACACTTTGACTCAACCAATTTACTTTCGTTCGATAACGTCAATACAAGTCCTTTGTGTATGAACAACTCCAATCCTCATTCTGTAACACAGAATACCAGCCTTAATGCCAGTTCAGCAGACACTGGCTGTAATATGGGGCAACATCTTGAGCATCCTGTCTTGGGCAAATCAAATGGATCAGTAAATGAGCTTATCCCACCTGCTGTTGGTTCTGTGCCCTTTGCTCATCCTTCTGGAAGTAACATGGTAGATAATGGCAGTGTTAGGCCAGGGTGTTCTCTTGATATCCAGCGTGTATCTTGTAAAAGAAAGGCGGTTGAAGGATATGTTGGACAATCTTCAGGTGGTGAAAGTTCTAGCTGCAGCCAGTGTACAGAAAGCAGGGCTTGGCATACCCTTCCTACTCAGAGTAACTCTCGGTGCAGTTTAAGCAGATCTGCTTCATCAGCACAGACAAGTTCAAGACCTGGCCTGGATGTAGGCTATGAAGTAGGGGATGAATCTTCAGAGAGCATTAATAATTTAAATGTTGCAGGGAGCTCAAATAGCTTCCTCAGGAATTCCCGTATGAGGATAAATCCTTCAAACCAACAGGATTCCATTCCTTATGTTGCATTCTCAAATGGCAGTGTAACTAGGCGTTCTACAATTCCTTCATCATCTCCTATGACAAACAGTTTTCGTCCTGCTGGTAATTCTCTGGATTTGGGGTCAGCACCATATGCAGATGATATGGTTCCTCATAGCCAGCCCCTTGGAATTGGTTCTCCTCCTATACACAGGAATATGGCATCATTTGGGTGGAGTGGCAGCTCTAACTTGAGAAATAGCCATTTGTCAAGCTCAATGATTTGGGCAGACAGGGATAATCTACTGCATGAAGAAGGAAGCTCTAGAAGCACGTTTGAACATCCAATGTTTGTGCCAATGGCTGATTTAAGAAATTCGGTTCGAAATCCAACCAACAGAGCTTTGAGTAATGCAAATTTAAATATATCAGGAAATGTCACTTCCTCGCAACGTGCTGGGTTAAGTTCAGGCATCAGTTCGCCGTCTGGTCCATCCTGGGTTTCTCATCCCAATCCTCTACATCATCCACGGAGGTTATCTGATTATGCTCGTAGATCATTGTTGTCTTCTGGTTCTGAGTCTGCTGCAGGTTTCAACAATAGCAATTCTTTCTTGCACTCTGCTCCTATTGCTTCATCTGAAGCAAGGGCGCCATCATCTCGAGCTGGTAGTCAAGGGCGTAATCTGTCACACTCAAGATCACCATGGGTGGAGAGGCGAGTTGATAGTAACTTCAGACTTCCTTATTCATTGCAAGCTATGGCTGTTGCCAGTGAAGGAAGTAGCAGACTTGTATCTGAGCTCTGCAGTGTTTTGGGCCTCATGCGTAGGGGAGGGAACCTTCAGTTTGAGGATTTGATGATCTTTGACCATTCAGTATTTTCTGGAATGGCTGATATTCACGACCGACACAGGGACATGCGACTTGACGTTGATAACATGTCTTACGAGGAGTTATTGGCTCTGGAAGAACGGATTGGAAATGTGAGTACTGGATTGAGCGAGGAAAATATATTGAAACTACTGAAACAGAGGAAGTATTCAGTTGAAGAAGGGTCTCAATGTGACGCAGAACCCTGTTGTGTGTGTCAGGAAGAGTTTGACAATGGAGATGACGTTGGAACACTCGACTGTGGCCATGATTATCATACCAACTGCATCAAACAGTGGCTAATGCAGAAGAATCTGTGCCCGATTTGCAAGACAAAAGGCTTGGCAGCGTGA 2139 0.439 MQGTRGRIGSLPETLEFDCGSTSSNVTMDQQQICWDGMRNPMENQMPSFMISPGGINPLYANSIDHGWKSVNNWRIGEPSSSGSHIQINNDEQKREFGWSSSTSADAVVGSRLERHFDSTNLLSFDNVNTSPLCMNNSNPHSVTQNTSLNASSADTGCNMGQHLEHPVLGKSNGSVNELIPPAVGSVPFAHPSGSNMVDNGSVRPGCSLDIQRVSCKRKAVEGYVGQSSGGESSSCSQCTESRAWHTLPTQSNSRCSLSRSASSAQTSSRPGLDVGYEVGDESSESINNLNVAGSSNSFLRNSRMRINPSNQQDSIPYVAFSNGSVTRRSTIPSSSPMTNSFRPAGNSLDLGSAPYADDMVPHSQPLGIGSPPIHRNMASFGWSGSSNLRNSHLSSSMIWADRDNLLHEEGSSRSTFEHPMFVPMADLRNSVRNPTNRALSNANLNISGNVTSSQRAGLSSGISSPSGPSWVSHPNPLHHPRRLSDYARRSLLSSGSESAAGFNNSNSFLHSAPIASSEARAPSSRAGSQGRNLSHSRSPWVERRVDSNFRLPYSLQAMAVASEGSSRLVSELCSVLGLMRRGGNLQFEDLMIFDHSVFSGMADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEENILKLLKQRKYSVEEGSQCDAEPCCVCQEEFDNGDDVGTLDCGHDYHTNCIKQWLMQKNLCPICKTKGLAA 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g1730 712 MobiDBLite consensus disorder prediction 451 472 - -
Acco10g1730 712 MobiDBLite consensus disorder prediction 250 276 - -
Acco10g1730 712 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 628 709 IPR013083 -
Acco10g1730 712 MobiDBLite consensus disorder prediction 250 271 - -
Acco10g1730 712 FunFam E3 ubiquitin-protein ligase MBR2 633 710 - -
Acco10g1730 712 ProSiteProfiles Zinc finger RING-type profile. 665 706 IPR001841 -
Acco10g1730 712 SUPERFAMILY RING/U-box 653 708 - -
Acco10g1730 712 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 164 710 IPR045191 GO:0061630
Acco10g1730 712 MobiDBLite consensus disorder prediction 520 537 - -
Acco10g1730 712 SMART ring_2 665 705 IPR001841 -
Acco10g1730 712 MobiDBLite consensus disorder prediction 520 540 - -
Acco10g1730 712 Pfam Ring finger domain 665 706 IPR001841 -
Acco10g1730 712 MobiDBLite consensus disorder prediction 451 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g1730 Acco-ChrAcco10 30550490 30553743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g1730 1 710 C3H Transcription Factor Family AT2G15530 32.043 1.49e-79 266
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco05g1939 05 35745912 35749428 Acco10g1730 10 30550490 30553743 CCT
Acco10g1730 10 30550490 30553743 Acco10g1730 10 30550490 30553743 ECH