Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g1722 ATGGCTCTTCTGCTGGACAATTGCGACGGCATATTACTCTCCCTCGACTCTCACAAGTCAGTGCCGGCTCCCTTCCTCAGCAAGACCTACCAGCTCGTGGATGATCCCGCCACTGATCACATCGTCTCCTGGGGTGAAGACGACACCACTTTCGTCGTCTGGCGTCCCCCTGAGTTTGCTCGCGATCTCCTCCCCAACTACTTCAAGCACAACAACTTCTCCAGCTTCGTTCGTCAGCTTAACACCTACGGTTTCAGAAAGATTGTGCCGGACAGATGGGAGTTTGCCAATGAATTCTTTAAGAAGGGGGAGAAGCACTTGCTGTGCGAGATCCACCGCAGGAAAACGGTTCAGCCTCATCCTCATAATCAGAACCACCACGGTGTCGGCGTCAACGTCCCGGCAGCTTTCTTTCCGTTTCCTTCCAGGCTCAGCAACTCTCCTCCCAGCGACTCCGACGACCAGTACAATAATTGGTGTGATTCACCGCCACCCCTCACTTCTCCGGCGGCTCCTGTTTCTTCCCTCATCAACTGCGCCGCCAACTACAACTCCTCCTTCACCGCCCTTTCCGAGGACAACGAGAGGCTCAGACGAAGCAACACAATGCTCATGTCCGAGCTCACCCACATGAAGAAACTTTATAACGACATCATCTACTTCGTTCAGAACCATGTCAAACCAGTCCCTCCCAGTAGTTCATACCCTTCCTCTTTGCTTTCTCAGCCCATGACGGCCACTACTACTAATACTCCCATAATGCAAAGGCCTTTGAACCAGCTTTTGGGGTATTATTCCATGAACAACAAGCAAACTCATCCTCTTATGAACTCGCCCACCAACACATCAAAGAGCTCCATTACCATAGTTGAAGAGCCCAGTAGTAACAGCTGCAAGACCAAGCTCTTTGGTGTGTCTCTTCAATCTAAGAAAAGAGTGCATCCTGAGTATGGTTTTAATCCCACAAATTCATCCGACGCTAGTAAGGCTCGTTTCGCTATGGAAAAAGATGACTTGGGCTTGAATCTCATGCCTCCTTCGACTTGTTAG 1050 0.5038 MALLLDNCDGILLSLDSHKSVPAPFLSKTYQLVDDPATDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTVQPHPHNQNHHGVGVNVPAAFFPFPSRLSNSPPSDSDDQYNNWCDSPPPLTSPAAPVSSLINCAANYNSSFTALSEDNERLRRSNTMLMSELTHMKKLYNDIIYFVQNHVKPVPPSSSYPSSLLSQPMTATTTNTPIMQRPLNQLLGYYSMNNKQTHPLMNSPTNTSKSSITIVEEPSSNSCKTKLFGVSLQSKKRVHPEYGFNPTNSSDASKARFAMEKDDLGLNLMPPSTC 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g1722 349 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco10g1722 349 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco10g1722 349 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco10g1722 349 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco10g1722 349 FunFam Heat stress transcription factor B-4 17 115 - -
Acco10g1722 349 Gene3D - 17 116 IPR036388 -
Acco10g1722 349 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 281 IPR027725 -
Acco10g1722 349 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Acco10g1722 349 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco10g1722 349 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g1722 Acco-ChrAcco10 30502928 30504098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g1722 1 348 HSF AT1G46264 55.733 4.83e-118 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Acco10g1722 HSF_DNA-bind 2.5e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco05g1931 05 35689337 35690522 Acco10g1722 10 30502928 30504098 CCT
Acco10g1722 10 30502928 30504098 Acco10g1722 10 30502928 30504098 ECH