Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Acco10g1692 | ATGCCATCAAACGGTTCTGATTCCCAACAACAACAACAACAGCAGCAGCAGCCATCGGAGCAGAATCAACGGCAACAGCAAACGCCAACGCAGACACCGCCGCCAATACAGCCACTTGCGCTGCCACAGCACTGGATGCCGCTACAATACCCTATGGGGGCGGTGGTAATGCCGCATCACATGTTGCCACCCCAGCATTATGGGCCGCCGCCACCTCAGCCCTACATGCCTTACCACCAGTACCAGCAGTTACCGCATGTAACTCACCCTCAACATCATCAGCATCAGGGATCCATCGGCGATAACAAAACGATCTGGGTCGGCGATTTACATAATTGGATGGATGAGAATTATCTGCATCGCTGCTTCGCTTCCACGGGAGAGATTTCCTCCATTAAGGTTATTCGCAACAAGCAGAATGGCCTATCAGAGGGTTACGGATTTGTGGAATTCTATTCACATGCCACGGCAGAAAACATTTTACAGAATTATGGTTCCATTTTGATGCCCAATACGGATCAACCTTTTCACCTGAACTGGGCAACATTTAGCACAGGAGACAAGCGTTCAGATAATGTTCCCGACCTTTCTATTTTTGTTGGAGATTTAGCTGCAGATGTTACAGATAGCATGTTGCATGAAACTTTTGCTAGTAAATATCCTTCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAATACTGGTCGTTCGAAGGGTTATGGCTTCGTCAGGTTTGGAGATGATAATGAGAGGTCTCAGGCTATGATTGAAATGAATGGTACGTATTGTTCTAGCAGACCAATGCGAATTGGTGCTGCAACCCCTAGGAAATCATCTGGCTACCAACAAGGAGGCCATGCGTCAAATGGAACATCCAACCAATCTGAAGCAGACTCAACAAACACAACAATATTTGTTGGAGGACTTGACCCTAATGTAACAGATGACGATCTTAGGCAGCCATTCTCCCAGTATGGTGAGATAGTCTCTGTCAAGATACCTGTTGGAAAGGGATGTGGATTTGTACAATTTGCTAACAGGAACAATGCTGAAGAGGCATTGCAGAAGCTGAATGGGACAGTGATTGGTAAGCAAACAGTTCGTCTTTCTTGGGGCCGCAATCCGGCAAATAAGCAGTTTAGAGGGGACTTTGGCAACCACTGGAGCGGGCCGTATTATGGAGGTCCTATTTTTGATGGTTATGGATATGCTCTGCCACCACCTCATGACCCAAGAATATATGCTGCTGCTTATGGGTCGTACCCCATATATGGAGGCCACCAACAACAGGTGAGCTGA | 1299 | 0.4688 | MPSNGSDSQQQQQQQQQPSEQNQRQQQTPTQTPPPIQPLALPQHWMPLQYPMGAVVMPHHMLPPQHYGPPPPQPYMPYHQYQQLPHVTHPQHHQHQGSIGDNKTIWVGDLHNWMDENYLHRCFASTGEISSIKVIRNKQNGLSEGYGFVEFYSHATAENILQNYGSILMPNTDQPFHLNWATFSTGDKRSDNVPDLSIFVGDLAADVTDSMLHETFASKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMIEMNGTYCSSRPMRIGAATPRKSSGYQQGGHASNGTSNQSEADSTNTTIFVGGLDPNVTDDDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTVIGKQTVRLSWGRNPANKQFRGDFGNHWSGPYYGGPIFDGYGYALPPPHDPRIYAAAYGSYPIYGGHQQQVS | 432 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Acco10g1692 | 432 | MobiDBLite | consensus disorder prediction | 276 | 308 | - | - | |
| Acco10g1692 | 432 | CDD | RRM3_NGR1_NAM8_like | 301 | 372 | - | - | |
| Acco10g1692 | 432 | Gene3D | - | 102 | 182 | IPR012677 | - | |
| Acco10g1692 | 432 | FunFam | Polyadenylate-binding protein RBP47 | 287 | 404 | - | - | |
| Acco10g1692 | 432 | CDD | RRM2_SECp43_like | 195 | 274 | - | - | |
| Acco10g1692 | 432 | CDD | RRM1_SECp43_like | 104 | 184 | - | - | |
| Acco10g1692 | 432 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 92 | 378 | - | - | |
| Acco10g1692 | 432 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
| Acco10g1692 | 432 | FunFam | Polyadenylate-binding protein RBP47B | 102 | 182 | - | - | |
| Acco10g1692 | 432 | SUPERFAMILY | RNA-binding domain, RBD | 178 | 292 | IPR035979 | GO:0003676 | |
| Acco10g1692 | 432 | SUPERFAMILY | RNA-binding domain, RBD | 67 | 183 | IPR035979 | GO:0003676 | |
| Acco10g1692 | 432 | FunFam | Polyadenylate-binding protein RBP47B | 184 | 286 | - | - | |
| Acco10g1692 | 432 | SMART | rrm1_1 | 197 | 271 | IPR000504 | GO:0003723 | |
| Acco10g1692 | 432 | SMART | rrm1_1 | 303 | 370 | IPR000504 | GO:0003723 | |
| Acco10g1692 | 432 | SMART | rrm1_1 | 104 | 179 | IPR000504 | GO:0003723 | |
| Acco10g1692 | 432 | Gene3D | - | 183 | 289 | IPR012677 | - | |
| Acco10g1692 | 432 | MobiDBLite | consensus disorder prediction | 272 | 308 | - | - | |
| Acco10g1692 | 432 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 196 | 275 | IPR000504 | GO:0003723 | |
| Acco10g1692 | 432 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 198 | 268 | IPR000504 | GO:0003723 | |
| Acco10g1692 | 432 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 304 | 367 | IPR000504 | GO:0003723 | |
| Acco10g1692 | 432 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 105 | 167 | IPR000504 | GO:0003723 | |
| Acco10g1692 | 432 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 302 | 374 | IPR000504 | GO:0003723 | |
| Acco10g1692 | 432 | Gene3D | - | 290 | 402 | IPR012677 | - | |
| Acco10g1692 | 432 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
| Acco10g1692 | 432 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 103 | 183 | IPR000504 | GO:0003723 | |
| Acco10g1692 | 432 | SUPERFAMILY | RNA-binding domain, RBD | 291 | 402 | IPR035979 | GO:0003676 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Acco10g1692 | Acco-ChrAcco10 | 30314689 | 30318258 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Acco10g1692 | 105 | 381 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 28.169 | 1.23e-28 | 117 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Acco10g1692 | 10 | 30314689 | 30318258 | Acco10g1692 | 10 | 30314689 | 30318258 | ECH |