Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g1648 ATGGCTGGATTCTGTAATCCTTTTATCTCTTCTATTCTTGATCCTGTCATTTCTCCTAATAAATCTTGTAAAATTGATCAACACAATGAATCGACTTCTGGAATCGTGAGAATTCGTTGTGGACTAGGGTGGAATCTGAAGGTGATGGCAAGTGGGTTTGGGGAATCAACAAGTAGGTCGCCCCCAAGCCCTTCCTGCTTCGGCAACAATAATAACAATGACGCGGGCAATTTTGAATGCAATATTTGCTTTGACTTAGCACAAGATCCTATAATTACATTATGTGGCCATCTATTCTGCTGGCCTTGTCTTTACAAATGGCTTCACTTTCATTCTAAGTCACGAGAATGCCCAGTTTGCAAGGCCCTAATCGAGGAGAAAAAGTTGGTACCTTTATATGGGAGAGGAAAGACATCAACTGACCCACGATCAAAGTCTATTCCTGGTGATAATATCCCTCATCGGCCAGCTGGTCAGAGACCTGAAACTGCCCCTTCAAGAGAACCAAATCATTTTCGTCATCATGGATTTGGATTTATGGGTGGGTTGGGAGGGTTTTCCCCAATGCAAACAGCAAGATTTGGGGATTTCACATTGTCAGAAGCATTTAGTGGTTTAATACCATCCTTATTTAACTTTCAATTGCATGGATTTCATGCTGGGGCCATGTTTAGTGGAGCAACTGGTTTTCCTCATGGATATGCTCCTTCATTTCAGGGTGGCTATGCTCATGGGTTCCCTCGGAATACAGGTCAAGGACAACAAGATTACTACCTGAAGAGGCTGCTTCTGTTTGTTGTCTTTTTTGTCTTTCTTTCATTAATTTGGCAATAG 834 0.4209 MAGFCNPFISSILDPVISPNKSCKIDQHNESTSGIVRIRCGLGWNLKVMASGFGESTSRSPPSPSCFGNNNNNDAGNFECNICFDLAQDPIITLCGHLFCWPCLYKWLHFHSKSRECPVCKALIEEKKLVPLYGRGKTSTDPRSKSIPGDNIPHRPAGQRPETAPSREPNHFRHHGFGFMGGLGGFSPMQTARFGDFTLSEAFSGLIPSLFNFQLHGFHAGAMFSGATGFPHGYAPSFQGGYAHGFPRNTGQGQQDYYLKRLLLFVVFFVFLSLIWQ 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g1648 277 ProSiteProfiles Zinc finger RING-type profile. 80 121 IPR001841 -
Acco10g1648 277 ProSitePatterns Zinc finger RING-type signature. 95 104 IPR017907 -
Acco10g1648 277 MobiDBLite consensus disorder prediction 135 168 - -
Acco10g1648 277 SMART ring_2 80 120 IPR001841 -
Acco10g1648 277 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 68 272 IPR045103 GO:0005783|GO:0006511|GO:0061630
Acco10g1648 277 CDD RING-HC_AtRMA-like 78 122 - -
Acco10g1648 277 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 64 134 - -
Acco10g1648 277 SUPERFAMILY RING/U-box 77 133 - -
Acco10g1648 277 Pfam Zinc finger, C3HC4 type (RING finger) 80 120 IPR018957 GO:0046872
Acco10g1648 277 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 134 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g1648 Acco-ChrAcco10 29900898 29902144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g1648 78 260 C3H Transcription Factor Family AT1G19310 64.021 1.40e-79 238