Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g1581 ATGGCTGAGTGGTTCTCTCTAGGTGCAAAACATCAAGGCCCACAACAAACGAAGGTAGGAAAGGGAAAAGAAGATAACAGCAATTGTCTATTCTTGTTGAGCGAGAAGGAGATCTACAACACCAACAACAACAACAAGGGATTCGAGATATGGACAGAGTCTTATCAACATCATCATTCAAACCAATCCTTGAGCAACTGCTTCTCTCTTGGGGTGGGTCCTAGTTGTGGAAACTTGTTTGATGAGTCAACAAGGTTTGGATTGACGGTGATGAGGTCTGGAGGGGCTCTAGGAGGAGGAGGAGGCATGAATTGTCAGGATTGTGGGAATCAAGCGAAGAAGGACTGTACACATCTTAGATGCAGAACATGCTGTAGAAGTCGAGGGTTTCAGTGCCAAACCCACGTTAAGAGCACTTGGGTTCCCGCCGCCAGACGCCGTGAGCGAGAGCAACAGCACCAGCAGCTACAACATCAACGGCAACTTCGTGGCGATACCTCCAGACGTCACAGAGAAACTCACGGTGCAGCGGCCACTCAGCTTGCTCGCATTCCTTCACCTATAACCAGCACAGGGTTGGAGCTACGACAATTCCCTCATGAACTGAACTCGCCAGCCGAGTTTCAGTGTGTGAGGGTTAACTCAATAGAGACACCAGAAGAGCAGTACGCTTATCAAACCGCTATTAGCATCGGAGGGCATGTTTTCAAAGGAATCCTCTACGACCAAGGCCCTGATGAACCTTATAACGCCGGTGGTGATCGGAGCTCCTCCGCCGCAGTTGATGCTGATAACCAAAACCTTAACCTCATAACGGCTTCAACCACGTCAGCACCTCCGGCCAGCGCCAATCCGTTTGATCCTTCTTCAATCTACCCTAATATCCCACTTAATACCTTCATGGCTGGTACGCAATTCTTCCCACCACCAAGATCCTAA 939 0.4931 MAEWFSLGAKHQGPQQTKVGKGKEDNSNCLFLLSEKEIYNTNNNNKGFEIWTESYQHHHSNQSLSNCFSLGVGPSCGNLFDESTRFGLTVMRSGGALGGGGGMNCQDCGNQAKKDCTHLRCRTCCRSRGFQCQTHVKSTWVPAARRREREQQHQQLQHQRQLRGDTSRRHRETHGAAATQLARIPSPITSTGLELRQFPHELNSPAEFQCVRVNSIETPEEQYAYQTAISIGGHVFKGILYDQGPDEPYNAGGDRSSSAAVDADNQNLNLITASTTSAPPASANPFDPSSIYPNIPLNTFMAGTQFFPPPRS 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g1581 312 NCBIfam putative zinc finger domain, LRP1 type 104 146 IPR006510 -
Acco10g1581 312 NCBIfam LRP1 C-terminal domain 197 245 IPR006511 -
Acco10g1581 312 MobiDBLite consensus disorder prediction 145 179 - -
Acco10g1581 312 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 298 IPR007818 GO:0003700|GO:0006355
Acco10g1581 312 MobiDBLite consensus disorder prediction 1 23 - -
Acco10g1581 312 MobiDBLite consensus disorder prediction 145 176 - -
Acco10g1581 312 Pfam Domain of unknown function (DUF702) 102 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g1581 Acco-ChrAcco10 29380751 29382364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g1581 1 312 C2H2 Transcription Factor Family AT1G75520 41.823 1.86e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Acco10g1581 DUF702 5.6e-61 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco05g2944 05 44093897 44095272 Acco10g1581 10 29380751 29382364 CCT
Acco10g1581 10 29380751 29382364 Acco10g1581 10 29380751 29382364 ECH