Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g1559 ATGGAAGAAGGGTTGGTGGTGTTGATGGTGATGCTAATGAGTTTGTTTGCTTCGAGTTTTAGCTTCTCTTCTTTTTCGTCTCTCAACAGTGAAGGTATGGTGCTGTTAATGTTTAAGAACAGAGTGGTGAGAGACCCGTTTGGAGCTTTGTCTACTTGGAACATTGAAGGTGGATATACTGATCCCTGTTCCTGGTTTGGAGTAGAATGCTCTGTTCACGGCAAAGTTGTTTCCTTGAATTTGAAGGACCTTAGTCTTGAAGGAACACTGGCCCCTGAAATTGGGAAGCTGACTCACATAAAATCTATCATTTTGCGCAACAATTCTCTTTCTGGAGAGATCCCTAAAGAGATATCACAACTGGAGGAACTGGAAGTTCTTGACTTGGCATATAACAACTTTAAAGGATCATTTCCATCTCACACTTCCAGAAATCCATCCCTCACTACTCTGCACATAGGCCACCAGGAGGATGAACCATACAAGAGGAAACTTCTTCATAGATCAAAAGCAAGGAGACAAAGAGATCATAGGAAAGAGTCTGTGTCACCCTCACCCTCCCCTTCCCTCTCTTCATTACCACCAGATTCCGAGTCTTTCTTACAACCAGAACCACCATCTGAATTAACCCCATCACCATATATGCTACCACCTTTAGGTTCCCCTGAAGTTTCTCCTTCACCATCGCCGTCCTCTATTTTTCTCACGCCTTCAATATCACCAATAGCGACACCAACCGCAGGAATATCAGTACCAGCAAATCCACCTACTGTTGTGTTCTCTCCTTCACAGTCCAATTGGATTTCAGCACCTTCCCCTGCTTCATTTTGGAACCAAGGGAGCACAAAAAGTTTCAACCCCGATAAATCTTTGATCATTTGGTCAACAGCTGGGGGTGTATCCTTACTGGTTGTTGTGTCAGCAATTGTCTTTTCTTGCTTCCGAACTAGCAGGGTTGTTACTGTGAAACCTTGGTCCACTGGGTTAAGTGGGCAGCTACAGAAAGCTTTCGTCACAGGTGTGCCAAATCTCAAACGAGGAGAGATTGAAGCAGCTTGTGAAGATTTCAGCAACATTATTGGTTCCTTTCCGGAGGGGACTGTTTATAAGGGGACTCTTTCGAGTGGTGTTGAGATTGCTGTAGTTTCTACCGCCGTGAAATCATCTAAATACTGGCCTAAAACTATGGAAGCTCAATTTAGGCAAAAGATAGAGACCTTATCCAGAGTGAACCATAAGAACTTCGTCAATCTTATTGGGTATTGTGAAGAGAAGAAACCATTCACAAGAATGATGGTCTTTGAGTATGCCCCAAACGGAACTCTCTTTGAACATCTACATATAAGAGAAGCAGAGCAGCTAGATTGGGGAATGAGAATGAGGATAGCTATGGGAATAGCTTATTGTCTAGAGCATATGCATCAGCTGGAACCACCCATTGGCCTCAGAAACCTTCAGTCTTCATCTATATACCTCACTGAAGATAATGCAGCTCAAGTATCAGACCTTTGTTTCTGGAATGACATGGCTGCTGCTGCAGAGAAAAGTTATGCGGCCGCAAAGCCATCAGAAACATCATCAACAGATACAAAGGAAAATGTATATAGCTTTGGGGTTATACTGTTTGAGTTGATAACAGGGCGAATTCCCCACCCTGTGGAAATTGGCTTTATTTCACAGTACTTAACAATGGGGCAATCTTTGAGAAATATGGTGGATCCAACTCTGAACTCTGTGCAAGCAGAAGAAGCTGAAAAATGGTGGGAATTGATAAAACAGTGTTTGCATCCAGAACCAGAGAAAAGGCCAACTATGAGAGAAGTTGCAGCTAAGTTGAAGGAAATAACTGCAATGGGACCCGACGGAGCAACTCCAAAATCTTCACCTCTTTGGTGGGCAGAACTGGAAATTATGTCCACAGATTCTGCTTGA 1932 0.4327 MEEGLVVLMVMLMSLFASSFSFSSFSSLNSEGMVLLMFKNRVVRDPFGALSTWNIEGGYTDPCSWFGVECSVHGKVVSLNLKDLSLEGTLAPEIGKLTHIKSIILRNNSLSGEIPKEISQLEELEVLDLAYNNFKGSFPSHTSRNPSLTTLHIGHQEDEPYKRKLLHRSKARRQRDHRKESVSPSPSPSLSSLPPDSESFLQPEPPSELTPSPYMLPPLGSPEVSPSPSPSSIFLTPSISPIATPTAGISVPANPPTVVFSPSQSNWISAPSPASFWNQGSTKSFNPDKSLIIWSTAGGVSLLVVVSAIVFSCFRTSRVVTVKPWSTGLSGQLQKAFVTGVPNLKRGEIEAACEDFSNIIGSFPEGTVYKGTLSSGVEIAVVSTAVKSSKYWPKTMEAQFRQKIETLSRVNHKNFVNLIGYCEEKKPFTRMMVFEYAPNGTLFEHLHIREAEQLDWGMRMRIAMGIAYCLEHMHQLEPPIGLRNLQSSSIYLTEDNAAQVSDLCFWNDMAAAAEKSYAAAKPSETSSTDTKENVYSFGVILFELITGRIPHPVEIGFISQYLTMGQSLRNMVDPTLNSVQAEEAEKWWELIKQCLHPEPEKRPTMREVAAKLKEITAMGPDGATPKSSPLWWAELEIMSTDSA 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g1559 643 Gene3D Ribonuclease Inhibitor 27 193 IPR032675 -
Acco10g1559 643 MobiDBLite consensus disorder prediction 206 225 - -
Acco10g1559 643 ProSiteProfiles Protein kinase domain profile. 354 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco10g1559 643 Pfam Leucine rich repeat N-terminal domain 29 71 IPR013210 -
Acco10g1559 643 Gene3D Phosphorylase Kinase; domain 1 329 436 - -
Acco10g1559 643 MobiDBLite consensus disorder prediction 141 231 - -
Acco10g1559 643 Pfam Protein tyrosine and serine/threonine kinase 358 612 IPR001245 GO:0004672|GO:0006468
Acco10g1559 643 MobiDBLite consensus disorder prediction 183 198 - -
Acco10g1559 643 SUPERFAMILY Protein kinase-like (PK-like) 339 612 IPR011009 -
Acco10g1559 643 SUPERFAMILY L domain-like 30 155 - -
Acco10g1559 643 FunFam Leucine-rich repeat receptor-like kinase 31 157 - -
Acco10g1559 643 PANTHER PROTEIN MALE DISCOVERER 2 9 640 - -
Acco10g1559 643 FunFam Inactive receptor-like serine/threonine-protein kinase 328 436 - -
Acco10g1559 643 Gene3D Transferase(Phosphotransferase) domain 1 438 619 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g1559 Acco-ChrAcco10 29235422 29239258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g1559 9 613 Receptor kinase-like Gene Family AT5G16000 25.463 1.17e-39 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Acco10g1559 PK_Tyr_Ser-Thr 4.4e-27 CL0016