Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g1516 ATGGCATCTTCTTCCGGAAGCCTTGGCACTTCTGCTAACTCTCACCCCAACACCTTCACTTTCTCTACGCATCCATTCATGAATACTTCTTTCTCTGAGCTACTTGCTTCTCCCGTCGCCGCCGCCGATAACCCCGCTGCCGTCGCCTCTGTCGATAAATCCCGCGGATTGTCGGATCGTATTGCAGAGAGAACCGGGTCGGGTGTGCCCAAATTCAAGTCGACCCCACCTCCTTCTCTTCCTCTCTCTCCTCCTGCCATTTCTCCTTCATCTTACTTCTCCATCCCTGCTGGGTTGAGCCCTACTGAGCTTCTTGACTCTCCTGTTCTCCTTAATGCTTCTAACATTTTGCCATCTCCGACAACCGGAGCATTCTCTGCTCAGGCCTTCAACTGGAAGACAAGTTCTGGGCAAAACCTGCAAAACATCAAAGAAGAAGACAAGAACTTCTCAAATTTCTCGTTTCAGCCCCAATCCAGACCTCTTCCATCCACCACAACGTTTCAAACTTCAGCTCCCTCTAATCAAACTCAACAGGCGTGGAGTTTTCAAGAAGCCACGAAGCAAGACAACAACTTTTCTTCAGGAAAGAATATGGTGAAAGCCGAGAACGCCACACAGAACTATTCCACAGAGATGGTTATGAGTAATGTCCAAGCAAACCATAATAGTGGGTTTCAATCAGATCATAGCAATTACCATCCTCAGACCTTGAGCAGAAGATCTGATGATGGGTACAACTGGAGAAAGTATGGGCAAAAGCAAGTGAAAGGAAGTGAGAATCCTAGAAGCTATTACAAATGCACATACCCTAGTTGCCCAACAAAAAAGAAGGTTGAGAGGTCCTTGGATGGACAAATCACTGAGATAGTCTACAAGGGAACACATAACCACCCCAAGCCTCAGGCAACTAGGAGAAACTCATCAAATGCATCTTCTCTCCCGATTCCTGGTTCAAATTCTGTGACAGCTGAAATCCCAGATCAGTCATTTGCCAGCCATGGTAATGGACAAGTGGATTCAGCTGCAACACCAGAGAACTCATCCATATCGATGGGGGATGATGATTTTGAGCAGACTTCCCAGAGGACTAGATCAGGGGGAGATGAGTTTGATGAAGATGAATCTGATGCCAAAAGATGGAAAATGGAGGGTGAAAGTGAGGGTATATCTGCAGCTGGAAGTAGAACAGTAAGGGAACCAAGAGTTGTAGTCCAGACAACCAGTGACATAGATATTCTAGATGATGGATACAGATGGAGAAAATACGGGCAAAAAGTGGTGAAGGGAAATCCAAATCCAAGGAGTTACTACAAATGCACACACCCAGGATGTCCAGTGAGGAAGCACGTAGAGAGAGCCTCACACGACCTGAGGGCTGTGATCACAACCTACGAAGGAAAACATAACCATGATGTTCCGGCGGTCAGAGGGAGTGGCGGTGGCCATTCTGTGAACAGGCCTCTCTTAAACAATTCCACAAACACCAACAGTGCAATGACCTCAGCCATAAGACCATCAGCCATCACACACAACACCAACAACAACTCAATCAACATCTCAATTCAGAATTTTGGGGCAGCAGGAGAAAGTCAATCATCATCCCTGGCACTAGGGATGCTTCAGGGTCAAGGAAGCTTTGGTTTTTCAGGGTTTGGGAATGCAATGGGGTCCTTCATGAATCAAAATGATAATAACAATAATAATCAGAAGCAGCAAGCACAATCTGAGAATGGGTTTTCTTCGAGAGCCAAGGAGGAGCCGAGGGAAGATGTGTTTTTTGAATCTCTACTATACTGA 1800 0.4628 MASSSGSLGTSANSHPNTFTFSTHPFMNTSFSELLASPVAAADNPAAVASVDKSRGLSDRIAERTGSGVPKFKSTPPPSLPLSPPAISPSSYFSIPAGLSPTELLDSPVLLNASNILPSPTTGAFSAQAFNWKTSSGQNLQNIKEEDKNFSNFSFQPQSRPLPSTTTFQTSAPSNQTQQAWSFQEATKQDNNFSSGKNMVKAENATQNYSTEMVMSNVQANHNSGFQSDHSNYHPQTLSRRSDDGYNWRKYGQKQVKGSENPRSYYKCTYPSCPTKKKVERSLDGQITEIVYKGTHNHPKPQATRRNSSNASSLPIPGSNSVTAEIPDQSFASHGNGQVDSAATPENSSISMGDDDFEQTSQRTRSGGDEFDEDESDAKRWKMEGESEGISAAGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAVRGSGGGHSVNRPLLNNSTNTNSAMTSAIRPSAITHNTNNNSINISIQNFGAAGESQSSSLALGMLQGQGSFGFSGFGNAMGSFMNQNDNNNNNQKQQAQSENGFSSRAKEEPREDVFFESLLY 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g1516 599 MobiDBLite consensus disorder prediction 358 386 - -
Acco10g1516 599 MobiDBLite consensus disorder prediction 558 588 - -
Acco10g1516 599 Gene3D WRKY domain 401 467 IPR036576 GO:0003700|GO:0006355|GO:0043565
Acco10g1516 599 MobiDBLite consensus disorder prediction 470 493 - -
Acco10g1516 599 FunFam WRKY transcription factor 230 302 - -
Acco10g1516 599 MobiDBLite consensus disorder prediction 292 396 - -
Acco10g1516 599 SUPERFAMILY WRKY DNA-binding domain 241 301 IPR036576 GO:0003700|GO:0006355|GO:0043565
Acco10g1516 599 ProSiteProfiles WRKY domain profile. 243 301 IPR003657 GO:0003700|GO:0006355|GO:0043565
Acco10g1516 599 MobiDBLite consensus disorder prediction 155 180 - -
Acco10g1516 599 MobiDBLite consensus disorder prediction 222 246 - -
Acco10g1516 599 Pfam WRKY DNA -binding domain 243 299 IPR003657 GO:0003700|GO:0006355|GO:0043565
Acco10g1516 599 Pfam WRKY DNA -binding domain 415 471 IPR003657 GO:0003700|GO:0006355|GO:0043565
Acco10g1516 599 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 105 515 IPR044810 GO:0003700
Acco10g1516 599 SMART WRKY_cls 242 300 IPR003657 GO:0003700|GO:0006355|GO:0043565
Acco10g1516 599 SMART WRKY_cls 414 473 IPR003657 GO:0003700|GO:0006355|GO:0043565
Acco10g1516 599 MobiDBLite consensus disorder prediction 558 581 - -
Acco10g1516 599 MobiDBLite consensus disorder prediction 301 357 - -
Acco10g1516 599 ProSiteProfiles WRKY domain profile. 409 474 IPR003657 GO:0003700|GO:0006355|GO:0043565
Acco10g1516 599 FunFam WRKY transcription factor 33 401 467 - -
Acco10g1516 599 MobiDBLite consensus disorder prediction 222 242 - -
Acco10g1516 599 MobiDBLite consensus disorder prediction 49 83 - -
Acco10g1516 599 SUPERFAMILY WRKY DNA-binding domain 406 474 IPR036576 GO:0003700|GO:0006355|GO:0043565
Acco10g1516 599 Gene3D WRKY domain 228 302 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g1516 Acco-ChrAcco10 28910182 28912801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g1516 69 598 WRKY Transcription Factor Family AT2G38470 45.856 6.26e-112 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Acco10g1516 WRKY 1.7e-25 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco10g1516 10 28910182 28912801 Acco10g1516 10 28910182 28912801 ECH