Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g1514 ATGACTCACAGCAAGAGGCTCAAGAAGAAAGGCCGTGCCAAAAATTGGGGCCCAAAAAGTTTTGGGCGTAAAATTCTAGGGCTCTATTCGATCCAAAAATTGAACACCGTCGTCTATGCTCTCTTCGCAGAACCTCACTTCCTTCCTCGCCCTCACTTCCTCCTCCGAGCCGCAGAGACCATGCTTTCAGGGGACATACCTCCTAATCAGACTATATACGTTAAGAATCTCAATGAGAAGGTCAAGAAAGAAGAGTTAAAGAGATCATTGTATTGCTTATTCTCACAATATGGAAGGATTTTGGATGTTGTTGCTTTGAAAACACCCAAGCTACGAGGACAAGCATGGGTTTGTTTTAGTGAAGTAACAGCTGCCAGTAATGCTGTGCGACAAATGCAGAACTTCCCATTCTATGACAAACCAATGCGAATTCAATATGCAAAAACAAAGTCAGATTGTATTGCTAAAGAAGAGGGAAGTTATGTTCCAAGGGAGAAGAAGAAGAAACAAGAGGAAAAAGCTGAAAGAAAGCGACGTGCTGAAGAAGCTCAGCAGTCTTCTGTGCCGAATGGTACAAGTGGTACAAGTAATGGTGGCCCGGCGTCTGCTTTCCGCCAAGGGACAGGTGCCCAAGAAGCAGTCGCTCCTAACAGTATTTTGTTTATAGAGAATTTGCCTCATGAAACCACCAGCAGGATGCTTGAAATGCTTTTCCAACAATACCCTGGTTTTAAAGAGGTGCGTCTGATTGAGGCAAAGCCGGGTATTGCATTTGTAGACTTTGAAGATGAGGTACAGTCCTCCATGGCCATGCAGGCTCTTCAAGGCTTCAAAATCACTCCTCAGAATCCCATGGCCATAAATTTTGCTAAAAAGTAG 879 0.4414 MTHSKRLKKKGRAKNWGPKSFGRKILGLYSIQKLNTVVYALFAEPHFLPRPHFLLRAAETMLSGDIPPNQTIYVKNLNEKVKKEELKRSLYCLFSQYGRILDVVALKTPKLRGQAWVCFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCIAKEEGSYVPREKKKKQEEKAERKRRAEEAQQSSVPNGTSGTSNGGPASAFRQGTGAQEAVAPNSILFIENLPHETTSRMLEMLFQQYPGFKEVRLIEAKPGIAFVDFEDEVQSSMAMQALQGFKITPQNPMAINFAKK 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g1514 292 MobiDBLite consensus disorder prediction 184 204 - -
Acco10g1514 292 MobiDBLite consensus disorder prediction 158 209 - -
Acco10g1514 292 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 149 IPR000504 GO:0003723
Acco10g1514 292 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 68 149 - -
Acco10g1514 292 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 220 279 IPR000504 GO:0003723
Acco10g1514 292 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 142 IPR000504 GO:0003723
Acco10g1514 292 SUPERFAMILY RNA-binding domain, RBD 68 280 IPR035979 GO:0003676
Acco10g1514 292 Gene3D - 208 292 IPR012677 -
Acco10g1514 292 CDD RRM2_U1A_like 216 287 - -
Acco10g1514 292 MobiDBLite consensus disorder prediction 158 183 - -
Acco10g1514 292 Gene3D - 64 171 IPR012677 -
Acco10g1514 292 CDD RRM1_U1A_like 71 148 - -
Acco10g1514 292 Coils Coil 164 186 - -
Acco10g1514 292 FunFam U1 small nuclear ribonucleoprotein A 64 169 - -
Acco10g1514 292 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 218 292 IPR000504 GO:0003723
Acco10g1514 292 SMART rrm1_1 219 288 IPR000504 GO:0003723
Acco10g1514 292 SMART rrm1_1 71 145 IPR000504 GO:0003723
Acco10g1514 292 FunFam U2 small nuclear ribonucleoprotein B'' 209 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g1514 Acco-ChrAcco10 28883241 28885965 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g1514 11 292 Eukaryotic Initiation Factors Gene Family AT1G71770 22.837 1.01e-09 57.4