Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g1472 ATGGGGTCCGAGTTCTGTGTTGGTGTTTCTGGTGCCACTGCTCATGAATGGAAAAAGGGGTGGCCTCTTTCATATGGTGGATTTGCTCAATATTGTAACAGCTGCGGAATTTCAACCAAATGCAAGCTTGACACTTTTGATTCCATATCTTCCCATGAGGCATCCATTTTCTGTAGTAAATTCCACCGTGAAGAAACTGGTTGGAGGGATTGCGGCTTTTGCAACAAGCCTATCCACAGTGGATGCATAGTATCCAGGCATTTGTTTGACTACCTTGACTTCGGAGGTATAGGTTGCATCAGCTGTATAAAGGATTCTCGATCGCGTTTGAACACTAAAGAACCTAACGGGGCTGTTACACCTACCACGACAAATGCAAGTGATTGTCCCCCTCTTCATATTGATGGGAAACAGTTGGTGGATATTGTTGATGAAGGAAAAACGATGCCATTATGCAGAATGGTCGAAGCTACTGGGACGAATGGTTGGCATCAGCCTCAGAGAGATAAAATGAGTTCATCTAGTGGGTCAAAGAGCCAAGATATTAAATGTCTAATAAGGGATATGGATTCAGGGTTTTCAAATATGATTACACCATCTATTCAGTCATTAGAATTTCCTTTATTAGAAAATAGTAGAACAACATGGGAGATTAAAAATATGTGTGAACCACTCACACAACCATCTTTGAGTATGTCCCTGGGAATTCCATCAGGAAACTCTAACTCTGCCCCTGCTTCTGCTGGCGAGATTGTAGAAGAAAGGCTTGAGGGCAAACCATATTCTCTGTTTCATCAAGGGCAAAGATCTCATCCTGTATTTGCTAAACCATCAAAGACTGGTCTTTCCATGAACATAGAAACAAATAAAGGAATGAATTCTATTTCAAAGGCACGTGTTGGCCGGCCGCCTGTTGAAGGAAGAGGCAAGAGTCAGCTACTTCCTCGGTACTGGCCTAGGTATACTGATGAAGAGCTGAAGCAATTGTCTGGAAATTTGAAATCCTCTGTAGTGCCATTATTTGAGAAGGTGCTGAGTGCCAGTGATGCAGGTCGAATTGGGCGCCTTGTCCTTCCAAAAGCTTGTGCTGAAGCCTTTTTCCCTCCTATCTGTCAATCAGAAGGTCTTCCTTTGGAAATACTAGATGTGAAGGGGAATGAATGGACATTTCAGTTCAGATATTGGCCTAATAACAACAGCAGGATGTATGTATTGGAGGGTGTGATCCCTTGCATACAGTCAATGCAATTGATTGCGGGTGATACTGTGACATTTAGTAGGATAGATCCTGGGGGCAGACTTATTATGGGTTTCAGAAAGACAGCAATTAGTCTGGAACCGCAGGATGCGTCTACATCTGGACATTCTAATGGGATTACAACAAGGGAAACAACTATTTCTGGTGCAACTGAGAACTTGCCCTCAGGAAGTGGTTATTCTGATCTTCTTCAATCTATGGAAGAGAACAGGGAACCTCACTTAAATAGACAGTCAGAAAACCTGCATTTGGGTAGCAGGGTAGCTGATTTTCCCCATACGGAAAATTATGGCCAGACAACAAAAAATGATTCACCGCAGCTATCAATTTCAGTTTCAGAGAAGAAAAGGACTCGGAATATTGGGCCTAAGAGTAAGAGGTTGCTCATTAATTGTGAAGATGCTTCGGAGTTGCGACTAACGTGGGAGGAAGCACAAGATTTACTTCGTCCACCACCTAGTGTTGAGCCAATCATTGTCACAATTGAGGACCACATTTTTGAGGAGTATAATGAACCCCCTGTTTTTGGGAAGAGAACTATATTCAGTGCCTGCCCATCTGGGGGACTGGAACAATGGGCTTCATGTGATGATTGCTCTAAATGGCGAAAATTGCCTGTAGATGTTCTTTTACCACCTAAGTGGACTTGTTCTAAAAATGTCTGGGATCCAACCAGTTCTTCATGTTCTGCACCAGCGGAGCTAGGACCCAAGGAATTGGAAGATCTTTTGAAATCCCGCAAAGGCCTTGATGCTCTTGCTAATGTGGCAGTGTTGGGAGATGGTCTCGGAGATCCTTGCGAGTCATCAGCTGAACCCACCACCAAACATCCTAGACATCGTGCCGGCTGCACCTGCATCGTGTGCATTCAGCCACCAAGTGGAAAGGGAAGACATCATTCCACCTGTGCTTGCAACGTGTGCATGACTGTGAAAAGGCGGTTCAACACCCTTATGATGCGTAAGAAGAAACGCCAATCCGATGATAACCAGATGGATCATAGAGAAGAGTTTGGTATGAATGGAGCACCTAGGGAAGACACAAGTCATGTGGAGAAAGAAGGGGGCATAAAAAGAAGAAAGCTCAAGGCGGGCGAATCCAGTGCTGTGCAGATAGATTTGAATAGCCATCCTGATCGTGAAGGCATGCAAGTTGATGCACCGAGCTTGGATGGTCATCTTGGAGCTCCAAACTATCCACTTCCTGTATATGTGAATCAAAATGGCCCTAATGGAGGTCAGGGGTACTTCTCTAATGGGGGAAGCTTTGGACCAGTTATCTGGGAGAAGGAAAGAACAGAAGATAAGGCGTACTGTGATCGCAATTCAAGTCAGAACAATCATCCTTGA 2607 0.4427 MGSEFCVGVSGATAHEWKKGWPLSYGGFAQYCNSCGISTKCKLDTFDSISSHEASIFCSKFHREETGWRDCGFCNKPIHSGCIVSRHLFDYLDFGGIGCISCIKDSRSRLNTKEPNGAVTPTTTNASDCPPLHIDGKQLVDIVDEGKTMPLCRMVEATGTNGWHQPQRDKMSSSSGSKSQDIKCLIRDMDSGFSNMITPSIQSLEFPLLENSRTTWEIKNMCEPLTQPSLSMSLGIPSGNSNSAPASAGEIVEERLEGKPYSLFHQGQRSHPVFAKPSKTGLSMNIETNKGMNSISKARVGRPPVEGRGKSQLLPRYWPRYTDEELKQLSGNLKSSVVPLFEKVLSASDAGRIGRLVLPKACAEAFFPPICQSEGLPLEILDVKGNEWTFQFRYWPNNNSRMYVLEGVIPCIQSMQLIAGDTVTFSRIDPGGRLIMGFRKTAISLEPQDASTSGHSNGITTRETTISGATENLPSGSGYSDLLQSMEENREPHLNRQSENLHLGSRVADFPHTENYGQTTKNDSPQLSISVSEKKRTRNIGPKSKRLLINCEDASELRLTWEEAQDLLRPPPSVEPIIVTIEDHIFEEYNEPPVFGKRTIFSACPSGGLEQWASCDDCSKWRKLPVDVLLPPKWTCSKNVWDPTSSSCSAPAELGPKELEDLLKSRKGLDALANVAVLGDGLGDPCESSAEPTTKHPRHRAGCTCIVCIQPPSGKGRHHSTCACNVCMTVKRRFNTLMMRKKKRQSDDNQMDHREEFGMNGAPREDTSHVEKEGGIKRRKLKAGESSAVQIDLNSHPDREGMQVDAPSLDGHLGAPNYPLPVYVNQNGPNGGQGYFSNGGSFGPVIWEKERTEDKAYCDRNSSQNNHP 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g1472 868 ProSiteProfiles Zinc finger CW-type profile. 606 656 IPR011124 GO:0008270
Acco10g1472 868 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 5 813 - -
Acco10g1472 868 MobiDBLite consensus disorder prediction 740 785 - -
Acco10g1472 868 SMART B3_2 341 441 IPR003340 GO:0003677
Acco10g1472 868 SUPERFAMILY DNA-binding pseudobarrel domain 338 444 IPR015300 -
Acco10g1472 868 CDD B3_DNA 339 440 IPR003340 GO:0003677
Acco10g1472 868 FunFam B3 domain-containing transcription repressor VAL1 319 446 - -
Acco10g1472 868 MobiDBLite consensus disorder prediction 515 536 - -
Acco10g1472 868 MobiDBLite consensus disorder prediction 740 787 - -
Acco10g1472 868 MobiDBLite consensus disorder prediction 160 179 - -
Acco10g1472 868 Gene3D - 319 443 IPR015300 -
Acco10g1472 868 ProSiteProfiles B3 DNA-binding domain profile. 341 442 IPR003340 GO:0003677
Acco10g1472 868 Gene3D - 610 664 - -
Acco10g1472 868 Pfam CW-type Zinc Finger 611 653 IPR011124 GO:0008270
Acco10g1472 868 MobiDBLite consensus disorder prediction 448 480 - -
Acco10g1472 868 MobiDBLite consensus disorder prediction 515 535 - -
Acco10g1472 868 MobiDBLite consensus disorder prediction 267 286 - -
Acco10g1472 868 Pfam B3 DNA binding domain 341 439 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g1472 Acco-ChrAcco10 28488059 28494825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g1472 1 805 B3 DNA Binding Superfamily AT2G30470 46.017 0.0 632
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Acco10g1472 B3 1.2e-13 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco10g1472 10 28488059 28494825 Acco05g0833 05 14886109 14896055 CCT
Acco10g1472 10 28488059 28494825 Acco10g1472 10 28488059 28494825 ECH