Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g1465 ATGCCACTTCCGCTCTTCTCTCTCAAGTCTCAGCTCAAAGCATATGCTTCTTTCTCAGCAAGCATGGCAGATGAAGCACGTAATGGTCTAGTGGCAATCATGGAAAATGAAAAACATAATGATATGAAAGAGGGCGGTGAAGAAATTCCTCCGTCTGATCCCTTGTCTGAGAAGATAAAGAACATTTTGATGGAAGATCCTGATGGTGGTTGCTCCACTGAGGAGCTCCAACTGCAAAATCATGCAGCTAACTCTTCTAAGGTGTGTAAAACAAGGCAGAAACCCCGACAAAAGCTCGTCAGAATTATAGTAACTGACCCTGATGCTACTGATACTGAATCTTGCACCAGTGAAGATGCACGGGGAGGGGATAGGCAAGTGACGCAGATCTGCATTGACATTCCCTCTGATTCTGTCTCCTCTTTTGGCTCTGCTCCATTTCCTACCAAGGAAGACCAAACCCGCATTGATAAACCAAAGAAATCATCCAACAATGGTGACTCAGCTGGTGGCCTCAAGAAGTACAGGGGTGTTCGCCGTAGGAAATGGGGTCGGTGGGCTGCTGAAATCCGAGACCCAGTTAATCGTAAAAGGCTCTGGCTTGGAACCTTTGACACTGCAGAGGAAGCTGCATTAGAGTATGACAGGGCTGCCGTGAAGCTGAGGGGTCTGAATGCCGTCACGAACTTCCCCCAGTCTGTGACAAAGAAGATGAAGCCTTGCACCATCCGTGACAGCTCAAGCACTGATAGTTTTAACTCGTTCGGTGCAGCACTTGCATCCCCAACCTCTGTGCTGTCTTAG 804 0.4801 MPLPLFSLKSQLKAYASFSASMADEARNGLVAIMENEKHNDMKEGGEEIPPSDPLSEKIKNILMEDPDGGCSTEELQLQNHAANSSKVCKTRQKPRQKLVRIIVTDPDATDTESCTSEDARGGDRQVTQICIDIPSDSVSSFGSAPFPTKEDQTRIDKPKKSSNNGDSAGGLKKYRGVRRRKWGRWAAEIRDPVNRKRLWLGTFDTAEEAALEYDRAAVKLRGLNAVTNFPQSVTKKMKPCTIRDSSSTDSFNSFGAALASPTSVLS 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g1465 267 ProSiteProfiles AP2/ERF domain profile. 174 231 IPR001471 GO:0003700|GO:0006355
Acco10g1465 267 PRINTS Ethylene responsive element binding protein signature 175 186 IPR001471 GO:0003700|GO:0006355
Acco10g1465 267 PRINTS Ethylene responsive element binding protein signature 197 213 IPR001471 GO:0003700|GO:0006355
Acco10g1465 267 Pfam AP2 domain 174 223 IPR001471 GO:0003700|GO:0006355
Acco10g1465 267 CDD AP2 173 233 IPR001471 GO:0003700|GO:0006355
Acco10g1465 267 SMART rav1_2 174 237 IPR001471 GO:0003700|GO:0006355
Acco10g1465 267 MobiDBLite consensus disorder prediction 139 174 - -
Acco10g1465 267 Gene3D AP2/ERF domain 173 233 IPR036955 GO:0003700|GO:0006355
Acco10g1465 267 FunFam Ethylene-responsive transcription factor 2 173 232 - -
Acco10g1465 267 SUPERFAMILY DNA-binding domain 174 233 IPR016177 GO:0003677
Acco10g1465 267 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 96 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g1465 Acco-ChrAcco10 28409781 28412889 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g1465 78 267 AP2-EREBP Transcription Factor Family AT4G27950 40.201 1.02e-33 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Acco10g1465 AP2 2.6e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco10g1465 10 28409781 28412889 Acco05g0823 05 14536137 14536946 CCT
Acco10g1465 10 28409781 28412889 Acco10g1465 10 28409781 28412889 ECH