Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g1449 ATGCAGTCGGTTCTGAAGCAATACTTCGGGTTCTCCGAGTTCCGCCCGTATCAGAAGGATGTCATCGAGAAAATATTAGAGAAAAGGGACTGCATGGTAGTCATGGCGACTGGTAGTGGGAAGTCCTTGTGCTATCAGGTACCTCCATTGGTTGCTAGAAAGACTGGCATAGTTGTTAGCCCCCTTATTTCATTAATGCAAGACCAGGTAATGGCTTTGAAACAACGGGGTATCAGAGCTGAGTATCTTGGGAGCGCACAGACTGATCCCACTGTCCAGAATAAAGCTGAGAGTGGCCAATTTGACATTCTGTTCTTGACTCCTGAGAAAGCGTGCTCAATTTCTACCAGCTTCTGGTTGAACTTGCTGAAGGCAGGTATTTGTCTTTTTGCTGTTGACGAGGCACATTGCATATCAGAATGGGGCCATGATTTTAGGGTGGAATACAAGCAACTAGACAAGTTACGTGGTGTTCTATCTGATGTACCTTTTGTTGGCCTAACTGCAACTGCTACTGAAAAGGTTCGAGTTGACATAATCAGTTCCTTGAAGATGTGCAACCCTTATGTTTCGGTTGGTTCATTTGATCGCACCAATCTTTTCTATGTTGTCAAGCCTTTTAACCCCGGACAACATTTTGTGTATGAGCTTGTGCAAGAGATTTCGAAAAAAGTAGCTATTGGTGGTTCCACTATAATCTACTGCACTACAGTCAAAGATGTGGAACAGATTTCCAAGTCACTTTTGGAAGCAGGTGTTGCAGCTGGGATGTATCATGGGCAAATGAGTAATAAATCTCGTCAGGAATCTCATAGATTATTTGTTAGAGATGAACTGCGAGTCATGGTAGCAACTGTTGCTTTTGGTATGGGTATAGATAAGCCTGACATAAGACAGGTGATTCACTATGGCTGCCCTAAGAGCCTGGAGTCCTACTACCAGGAAAGTGGGCGATGTGGTCGAGATGGTGTAGCGTCTGTTTGTTGTCTTTATTACACAAGAAGTGACTTTGCAAAGGGCAAATTTTATTGTGGAGAGTTACAAACAGCAAAACAAAGAAAAGCTATCATGGAATCATTAATGGCGGCTGAACGCTATTGCTTGCTGACAACTTGCAGAAGAAAGTTTTTGCTTGAATACTTTGGGGAAAATGTTTCATCTGAAAGATGTGGGAACTGTGATAACTGCATTGTCTCAAAGAAGCAACGGGACATGTCAACAGAAGTATTTCTTCTACTTGCTTGCATTCAATCATGCGGGGGAAGATGGGGCCTGAACATGCCCATTGACATCCTGCGAGGGTCTCGAGCCAAGAAAATTCTTGATGCTCAGTTTGACAAGCTTCCTCTTCATGGTCTTGGGAAAGATCACCCGTCAAATTGGTGGAAAGCGCTAGGACATCAATTAATTTCTCATGGTTATTTGAAGGAGACTGTTGCTGACATGTACAGAACAGTGAGTGTCAGTTCAAAAGGGATGCAATTTCTGGCCTCTTCTACACCGGATTATCAACCACCCATAGTTCTGACAGTAACTGCTGAAATGCTTGATGAGGAGGAAAATAGATCTGCCCCAGAAGAATTCCAAAGTCTAGCCACTTCAGATACTGAAGGTTTTTCAGAGGCGGAGGTGCAACTCTACCAAATGCTTTTGGAAGAGAGAATCAAACTTGCAAGAAGTGTTGGAACAGCTCCATATGCCATTTGTGGCGATCAAACAATCAAGAAAATTGCACTGCAAAGACCATCTACAAAAGCAAGGCTAGCAAACATTGATGGTGTGAATCAGCACCTGGTAACCAATTATGGAGATCATTTTCTTCAAGCTATTCAACAATTGTCGCTAGGATTGAACCTTTCGCTGGATAGAGAAGCAAGCTTGCAAGCTCCTGCAGTAAGGACAGTGTCCACTGTAAGTCTAACCAATAAACCAAAGAAGTTGACGCAAGCAAAGTACGAGGCCTGGAAAATGTGGCAGGAAGACGGCCTTTCTATTCAGATGATTGCTAACCTTCCAAGCAGATCAGCTCCTATAAAAGAACAGACTGTTGCTGATTATCTGCTGGAAGCTGCCCGAGAAGGATTGCCTTTTGATTGGACTAGATTCTGTGAGATGGTCGGACTGACACCTGAAATCGTCTCGGAAATTCAGGGTGCTATTCTAAAGGTTGGATCTACAGAAAAATTGAAGCCTATAAAAAATGAGTTACCAGAAGAAGTAAGCTATTTACAGATCAAGACTTATTTGTCAATGCAAAATACTGGAATATGTCTTGAAGGCACTCAGCACGGGAGCTGCCAAGCAGAGAAAGATGGTGAATTCGTGAAGGAGGCATCAGATTTATTGCAGAATCCATTAGATACATGCAACATGGAAGAAAAAGGTGGGGAAATTGACATGTCTCCCAAGAGTCCAATGAAAAGAAATGACCTAGATAAGGACGAGGAATCGAATGGACCCGCCAGTGGTAGCCAGGTACAGAATCTTCTATTAGTCTGTGAGAAGGAGTTGTCAAACAAACGTCAAAAAGTCCGTGAACAAAATGAAGAAAATCCTATCAAATTGGGGGCAACTGAGAGTTCTGTAGTAGAGTGGCTGAAGAACCATGAAGGGGCTACGTTGAATGATATTTTGAAGTCCTTCAATGGATCCAGTGAAGATTCTGTGGTGGAACTACTAAATTGCCTTGAGGGTGATTTTTTGATCTATAAGAAAAATGGCATGTACAGGCTTTTGTGA 2739 0.4275 MQSVLKQYFGFSEFRPYQKDVIEKILEKRDCMVVMATGSGKSLCYQVPPLVARKTGIVVSPLISLMQDQVMALKQRGIRAEYLGSAQTDPTVQNKAESGQFDILFLTPEKACSISTSFWLNLLKAGICLFAVDEAHCISEWGHDFRVEYKQLDKLRGVLSDVPFVGLTATATEKVRVDIISSLKMCNPYVSVGSFDRTNLFYVVKPFNPGQHFVYELVQEISKKVAIGGSTIIYCTTVKDVEQISKSLLEAGVAAGMYHGQMSNKSRQESHRLFVRDELRVMVATVAFGMGIDKPDIRQVIHYGCPKSLESYYQESGRCGRDGVASVCCLYYTRSDFAKGKFYCGELQTAKQRKAIMESLMAAERYCLLTTCRRKFLLEYFGENVSSERCGNCDNCIVSKKQRDMSTEVFLLLACIQSCGGRWGLNMPIDILRGSRAKKILDAQFDKLPLHGLGKDHPSNWWKALGHQLISHGYLKETVADMYRTVSVSSKGMQFLASSTPDYQPPIVLTVTAEMLDEEENRSAPEEFQSLATSDTEGFSEAEVQLYQMLLEERIKLARSVGTAPYAICGDQTIKKIALQRPSTKARLANIDGVNQHLVTNYGDHFLQAIQQLSLGLNLSLDREASLQAPAVRTVSTVSLTNKPKKLTQAKYEAWKMWQEDGLSIQMIANLPSRSAPIKEQTVADYLLEAAREGLPFDWTRFCEMVGLTPEIVSEIQGAILKVGSTEKLKPIKNELPEEVSYLQIKTYLSMQNTGICLEGTQHGSCQAEKDGEFVKEASDLLQNPLDTCNMEEKGGEIDMSPKSPMKRNDLDKDEESNGPASGSQVQNLLLVCEKELSNKRQKVREQNEENPIKLGATESSVVEWLKNHEGATLNDILKSFNGSSEDSVVELLNCLEGDFLIYKKNGMYRLL 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g1449 912 Gene3D - 197 399 IPR027417 -
Acco10g1449 912 MobiDBLite consensus disorder prediction 786 825 - -
Acco10g1449 912 NCBIfam RecQ family ATP-dependent DNA helicase 3 456 IPR004589 GO:0004386|GO:0006310
Acco10g1449 912 Pfam HRDC domain 545 610 IPR002121 GO:0003676
Acco10g1449 912 SUPERFAMILY "Winged helix" DNA-binding domain 395 502 IPR036390 -
Acco10g1449 912 Pfam DEAD/DEAH box helicase 16 175 IPR011545 GO:0003676|GO:0005524
Acco10g1449 912 SMART helicmild6 242 323 IPR001650 -
Acco10g1449 912 Pfam RQC domain 400 497 IPR018982 GO:0006260|GO:0006281|GO:0043138
Acco10g1449 912 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 22 189 IPR014001 -
Acco10g1449 912 Pfam Helicase conserved C-terminal domain 218 322 IPR001650 -
Acco10g1449 912 FunFam ATP-dependent DNA helicase 399 523 - -
Acco10g1449 912 SMART hrdc7 540 620 IPR002121 GO:0003676
Acco10g1449 912 PANTHER DNA HELICASE RECQ FAMILY MEMBER 2 682 - -
Acco10g1449 912 Coils Coil 830 850 - -
Acco10g1449 912 Pfam Helix-turn-helix domain 652 749 IPR029491 -
Acco10g1449 912 CDD SF2_C_RecQ 197 332 - -
Acco10g1449 912 FunFam ATP-dependent DNA helicase 536 626 - -
Acco10g1449 912 Gene3D - 1 195 IPR027417 -
Acco10g1449 912 Gene3D - 400 524 IPR036388 -
Acco10g1449 912 SUPERFAMILY HRDC-like 539 613 IPR010997 GO:0000166|GO:0044237
Acco10g1449 912 SMART RQC_2 404 508 IPR018982 GO:0006260|GO:0006281|GO:0043138
Acco10g1449 912 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 213 364 IPR001650 -
Acco10g1449 912 FunFam ATP-dependent DNA helicase 1 195 - -
Acco10g1449 912 SMART ultradead3 10 205 IPR014001 -
Acco10g1449 912 Gene3D HRDC domain 536 614 IPR044876 -
Acco10g1449 912 MobiDBLite consensus disorder prediction 792 817 - -
Acco10g1449 912 ProSiteProfiles HRDC domain profile. 540 620 IPR002121 GO:0003676
Acco10g1449 912 CDD DEXHc_RecQ 2 196 - -
Acco10g1449 912 FunFam ATP-dependent DNA helicase 197 398 - -
Acco10g1449 912 Pfam RecQ zinc-binding 336 396 IPR032284 -
Acco10g1449 912 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 337 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g1449 Acco-ChrAcco10 28232344 28240825 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g1449 9 339 Eukaryotic Initiation Factors Gene Family AT3G19760 21.802 7.68e-09 57.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco10g1449 10 28232344 28240825 Acco10g1449 10 28232344 28240825 ECH