Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g1422 ATGGATCATCAGTCACAGACTAGGGTTTTTGTTCAAACTTCAAAGAAGATGGAAGAAGAAGAAGAACGAAGCCTAGCAAGCTTCCTAAGATGGGCAGGAGAGCTTGGAATATCAGACGCAGTAATCACCAATCTACCTCAACATTGTCCTTCACGTCTGGGTTATTCTTCTCTCTGCGTCTCCCATTTTCCTCATTCTGGCGGTAGAGGTTTGGGTGCTGTGCGAGATCTCAGGAGGGGAGAATTGATCCTGAGAGTTCCAAAATCTGCCTTAATGACATCAGAGAATGTCATGCAAGATAAGAAGCTCTCAATTGCTGTTAATAACCACCCTTATCTCTCATCCTCTCAGATATTGATCGTTTGCTTATTATATGAATTGGGCAAGGGAAAATCTTCAAAGTGGCATCCTTACCTCATTCATTTGCCACATACTTATGACATCCTTGCTACATTTGGTGAAGTTGAGAAACAAGCTCTTCAAGTGGATGAGGCTCGGTGGGTCACGGAAAAGGCTGTATTGAAGGCCAAATCAGAGTGGAATGAAGCCAATGCTTTGATGGAAGAAATCAAACTCAAGTCTCAGCTTTTAACGTTCAAGGCATGGCTTTGGGCTACTGCAACGATATCATCCCGTACATTGCACATACCATGGGATGAAGCTGGCTGTTTATGCCCTGTGGGTGACTTGTTTAATTATGATGCACCTGGAAGGGAGCCATCTGATCCTGAAGATAAGGAGATTCTATCATCCAAATCTTCCTTGCAAGCCACTTCTATCTCAAATGTAGAGAATACTTTTATGGTTGACGCAGAGGAGCTTGATCCTCATTCTCAGAGACTAACAGATGGTGGGTTTGAGGAAGATGTTAATTCATATTGCTTTTATGCTAGGGAAAATTACAAGCAAGGAGAGCAGGTTTTATTATGCTACGGACTGTACACAAATTTAGAGCTTCTTGAACACTATGGTTTTCTCCTACAAGAAAATCCAAACGACAAAATTTTTATTCCTCTTGAATCTGCTGTATATTCTTCTAGTTCATGGCCTAAAGAGTCGCTCTATATTTGCCACGATGGGAAGCCTTCCTTCGCATTACTGTCGGCATTGAGGTTGTGGGCGACCCCTAAAAATAAGCGAAAGTCTGTTGGGCATCTTGTGTATTCCGGTTCTCAGTTGTCTGTGGACAATGAAATTATTGTCATGAAATGGCTGTCAAAGACTTGCGACTCTGCGTTGAACAGTTTGCCGACATCAATTGATGAAGACACAATACTCCTGAAAGCAATGGATAATAGCCGAGATTTTTGTAGTTTCATGGAAATTACCAAACTGTTGCCTTCTAGGAATGAGATTTGTTCATTTTTGCAAGGTTATAATCTGCAGGATGGCCATGATTTAACTGATGTGCTAGTATCCAGGAAAGTCAGAAGGTCCATGGACAAGTGGAAACTGGCTGTTCTATGGCGGCTTAGGTATAAAAAAGTCCTTGCGAACTGTATCTCTTATTGCAATGAAATACTTGAGTCTCTCTTGACGTAA 1542 0.4176 MDHQSQTRVFVQTSKKMEEEEERSLASFLRWAGELGISDAVITNLPQHCPSRLGYSSLCVSHFPHSGGRGLGAVRDLRRGELILRVPKSALMTSENVMQDKKLSIAVNNHPYLSSSQILIVCLLYELGKGKSSKWHPYLIHLPHTYDILATFGEVEKQALQVDEARWVTEKAVLKAKSEWNEANALMEEIKLKSQLLTFKAWLWATATISSRTLHIPWDEAGCLCPVGDLFNYDAPGREPSDPEDKEILSSKSSLQATSISNVENTFMVDAEELDPHSQRLTDGGFEEDVNSYCFYARENYKQGEQVLLCYGLYTNLELLEHYGFLLQENPNDKIFIPLESAVYSSSSWPKESLYICHDGKPSFALLSALRLWATPKNKRKSVGHLVYSGSQLSVDNEIIVMKWLSKTCDSALNSLPTSIDEDTILLKAMDNSRDFCSFMEITKLLPSRNEICSFLQGYNLQDGHDLTDVLVSRKVRRSMDKWKLAVLWRLRYKKVLANCISYCNEILESLLT 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g1422 513 Gene3D - 325 512 IPR036464 -
Acco10g1422 513 FunFam Protein SET DOMAIN GROUP 40 25 326 - -
Acco10g1422 513 Gene3D set domain protein methyltransferase, domain 1 22 324 - -
Acco10g1422 513 Pfam Rubisco LSMT substrate-binding 361 497 IPR015353 -
Acco10g1422 513 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 23 447 - -
Acco10g1422 513 Pfam SET domain 68 312 IPR001214 GO:0005515
Acco10g1422 513 FunFam Protein SET DOMAIN GROUP 40 330 442 - -
Acco10g1422 513 CDD SET_LSMT 57 326 - -
Acco10g1422 513 SUPERFAMILY SET domain 56 330 IPR046341 -
Acco10g1422 513 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 322 439 IPR036464 -
Acco10g1422 513 ProSiteProfiles SET domain profile. 56 312 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g1422 Acco-ChrAcco10 27998748 28001573 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g1422 23 340 NAC Transcription Factor Family AT3G56570 22.222 1.21e-07 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Acco10g1422 SET 1.7e-09 No_clan