Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g1418 ATGACAATGGGTGATTCAGAGTCCTTACCAGCATTCCCATTTGATAGAGCCGTTGAACAGGCAATTGTATCTATAAAGGAAGGTGCATACTTACTGAAGTGTGGACAGAGAGGAAAGCCCAAGCTCTGCCTTTTTAGACTTTCTCCAGATGAAAAAACTTTGATCAGGTATTCTGGGCAAAAAGAAAAGCATTTGCAACTGAGTGAAGTTACAAGAATTGTTCAAGAGCAGGGGATTATAAGGTCCCAGAGACTAAGCCAATCTGTAAAAGATTGCCATTCATTTTCACTAATCCATGCAAATGGCGAATGCTCGCTTGATTTGATATGCAAGGACAAAGCACAGGCTACTTCTTGGTTAGTGGGATTGAGAGCTGTTATATCCAGGCCCCAGCATTCAAGGACATTGAGTAGTTTAAGGACCCGTAAAGGAGTGCAGAGTTGTGTAAATAGTCCAGCTGGTTTTTTTCGGAGAAAGAAAAATCTTGGTCTCCTGGAGGATAATGTTGAATTTGCTCAGGTACACAGCTTACACGCAAGTCCTAACTTCTCACTTTCAGAAAGGTGTTTTTCTGAGGGCTTATCAGACGCATCTGATAGTATTTATTCTTCAGAGTCTTTCCCATACAATTCTCAGAGCACAATGGATATTAAAGTACCAAGTTCCGCACATGTTGATCCAGATTTTCTCAATAAAAATGGCTCAGTATATTCTGAAACAGAGTATGAGAAGAATTCATCCTACAGGCGTCTGCCTCGTCCTTCCTCTCCTCATGTAGGAAACAACAATGTATTGAAGGATGTCATGGTATGGGGTGAAGAGATTGTAGGAGGTGGTAATAATGTTCATAGTACATTGCCTAAGTTACTAGAATCCACTGTGATGCTAGATGTAAAAAATATAGCTTTAGGAGGAAAGCATGCCATCTTAGTCACAAGACAAGGGGAAGTGTTCTGCTGGGGTCAAGGGAAAGAGGGAAGGCTGGGCCACAAAATCGACATTGATGTTAGCTCTCCCAAAATTGTTGATTCTCTTAATGGGGTCCATGTAAAATCTGTTGCCTGTGGTGAGTATCATACGTGTGCTCTGACAGACACCGGTGTAGTATATACATGGGGAAATGATGGTGGTTGTACAGATTCTGTAGGTTGTGGGAAAAGCAGAAGTCAGTGGATACCACATAGACTTTCAGGACCTTTAGACGGTCTTCGTATTTTTAGTATTGCTTGTGGGGAATGGCATACCGCGATTATCTCCTGCTGTGGAAGGCTATTTACATATGGTGATGGTGCTTTTGGTGTTCTGGGGCATGGGAATCTTCAGAGAATTTTCCAACCAAAAGAAGTTGAATCACTTCAAGGCAAGCGAGTGAGGTCTGTTGCTTGTGGATCATGGCACACAGCAGCTATTGTAGAACTCGTGTCTTCCCGTTGTAAGTACAGTACTTCTTGTAAGCTCTTTACCTGGGGCGATGGAGATGGTGGGCGGCTTGGTCATGCTGATAATGGAAGGAAGATTTTACCAACATGTGTCACACAACTTGTGGACTATGACTTTGTTCAAGTATCTTGTGGAAGAATGTTGACTGTTGCACTTACTAATTTGGGTAAAGTTTTTACCATGGGAAGTAAGGCGCATGGACAGCTAGGAAACTCTCATGCCAAGGAGAAGACCGCAACTCTTGTCGAAGGACACTTGAAACAGGAGTTTGTTAAGCAGATATCATGTGGTTCATATCACGTGGTTGTGTTGACATCTTCAGGTAGTGTCTACACATGGGGCCGGGGAACACATGGGCAGTTAGGGTTGGGTGATACTAAAGACCGGTACTCGCCTTCTTTTGTTGAGGCTCTAAAAGATAGGCAGATAGAGAGTATTGCCTGTGGGTCAAGCTTTACAGCTGCAATTTGTTTACACAAACCTGTCTCTGTTGCTGACCAGTCAGCTTGTAGCAGTTGTGAGCTTCCATTTGGGTTCAGAAGAAAGCGGCATAACTGCTATAACTGTGGTCTTCTCTTTTGCAATTCATGTAGCAATAACAAAGTTACAAATGCATCTCTAGCCCCAAGTAGGAACAAGGCCTTTCGGGTTTGTGATCAGTGTTTTCATAAATGCCAAGGGATTACTCACTCACCTAAGGTATTTAAGTTGCAGAATTATAGCAGTATGCAGCAACTGAAGTGCCGGAGTAAATTTCCTGATCTGACAGAAAATGGAGGGGAAACAGCAGGGTCACCACGTACTCTTTCGTCGTTCAGCCAATCTTGCTACATGAAAAGCATGCCTAGTGGGAGGAAGGACTGCAAAAATCAACAAGAAAGCCAGAAACGTGTGGAAAATTTTTCTTCATTGATGGGTGGGGTGCCACAATGGGGGAAAGTTTCCTGCCCTGATATGTTTAAAACAGATTATACTGAAAATTCTTTCATGCATTTTTCTTCATTGAAGAATAAGTTAGGTTCTTCTGATCCTTTGAGAGTAGAATCTTTGGTATCTAGGATCCCTAATGCAGAGAAAGATACGCCAAAATCTGACAAAGTACTTGTAGAAGTTCAGAGGCTGAAAGCTATGGTTGGGAAGCTTGATGAGCAATGTAAGCTCCAAAAGAGTATGTTACATGAATATCAAGAAAAGATTGAGAAGAGTACGTCACAGGCGAAGGAGGAAGCTGCTAAATACAGGGCAGCAAAAGAGGTCATAAAAGTTTTGACTTCAAAACTTCAAACAATATCAGAAAAACACGATGCAATACAAGAAGGAAAAGTTGCAGTAAACGAATGCGTGCCTTATCTTTCAGATGTTGATACACCGAGAAGTTACAACTTAGACAATCAATCTGATTCTCCTATAGTGTTCTCTGACAAATTAAGATCCAAATTTGGAAGAAGCAAATTCCTCCAAAGTGGTAAATCTAGGGAGAATTTTCAAGTCACTGGAGTCCAACAATCTCAGCAAGATGGTAACAAAGGATCAAATGATGAATGGGTAGAAGAAAAGTACAATCCTGGTGTGTTCATCACTCTCACTTCCTTACCCTCTGGAGAAATTGGCCTTAAAAGACTGAGATTCAGCCGGAAACGATTCTCTGAACAAGAAGCAGAGCAGTGGTGGGAAGAAAATCAAGCCAGAGTGTGCAGTGATTATGGGATTGAAGGATTCAGTAACAACAGCCAAAATCAAGTGTAA 3186 0.419 MTMGDSESLPAFPFDRAVEQAIVSIKEGAYLLKCGQRGKPKLCLFRLSPDEKTLIRYSGQKEKHLQLSEVTRIVQEQGIIRSQRLSQSVKDCHSFSLIHANGECSLDLICKDKAQATSWLVGLRAVISRPQHSRTLSSLRTRKGVQSCVNSPAGFFRRKKNLGLLEDNVEFAQVHSLHASPNFSLSERCFSEGLSDASDSIYSSESFPYNSQSTMDIKVPSSAHVDPDFLNKNGSVYSETEYEKNSSYRRLPRPSSPHVGNNNVLKDVMVWGEEIVGGGNNVHSTLPKLLESTVMLDVKNIALGGKHAILVTRQGEVFCWGQGKEGRLGHKIDIDVSSPKIVDSLNGVHVKSVACGEYHTCALTDTGVVYTWGNDGGCTDSVGCGKSRSQWIPHRLSGPLDGLRIFSIACGEWHTAIISCCGRLFTYGDGAFGVLGHGNLQRIFQPKEVESLQGKRVRSVACGSWHTAAIVELVSSRCKYSTSCKLFTWGDGDGGRLGHADNGRKILPTCVTQLVDYDFVQVSCGRMLTVALTNLGKVFTMGSKAHGQLGNSHAKEKTATLVEGHLKQEFVKQISCGSYHVVVLTSSGSVYTWGRGTHGQLGLGDTKDRYSPSFVEALKDRQIESIACGSSFTAAICLHKPVSVADQSACSSCELPFGFRRKRHNCYNCGLLFCNSCSNNKVTNASLAPSRNKAFRVCDQCFHKCQGITHSPKVFKLQNYSSMQQLKCRSKFPDLTENGGETAGSPRTLSSFSQSCYMKSMPSGRKDCKNQQESQKRVENFSSLMGGVPQWGKVSCPDMFKTDYTENSFMHFSSLKNKLGSSDPLRVESLVSRIPNAEKDTPKSDKVLVEVQRLKAMVGKLDEQCKLQKSMLHEYQEKIEKSTSQAKEEAAKYRAAKEVIKVLTSKLQTISEKHDAIQEGKVAVNECVPYLSDVDTPRSYNLDNQSDSPIVFSDKLRSKFGRSKFLQSGKSRENFQVTGVQQSQQDGNKGSNDEWVEEKYNPGVFITLTSLPSGEIGLKRLRFSRKRFSEQEAEQWWEENQARVCSDYGIEGFSNNSQNQV 1061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g1418 1061 SUPERFAMILY PH domain-like 17 127 - -
Acco10g1418 1061 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 367 421 IPR000408 -
Acco10g1418 1061 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 422 473 IPR000408 -
Acco10g1418 1061 CDD PH_PLC_plant-like 16 128 - -
Acco10g1418 1061 Gene3D - 17 135 IPR011993 -
Acco10g1418 1061 Gene3D - 229 475 IPR009091 -
Acco10g1418 1061 Gene3D - 476 642 IPR009091 -
Acco10g1418 1061 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 644 706 IPR017455 -
Acco10g1418 1061 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 536 587 IPR000408 -
Acco10g1418 1061 Pfam Transcription factor regulating root and shoot growth via Pin3 993 1048 IPR013591 -
Acco10g1418 1061 ProSiteProfiles BRX domain profile. 993 1049 IPR013591 -
Acco10g1418 1061 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 62 908 - -
Acco10g1418 1061 Pfam Pleckstrin homology domain 19 125 IPR001849 -
Acco10g1418 1061 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 315 366 IPR000408 -
Acco10g1418 1061 Pfam Regulator of chromosome condensation (RCC1) repeat 587 636 IPR000408 -
Acco10g1418 1061 Pfam Regulator of chromosome condensation (RCC1) repeat 486 532 IPR000408 -
Acco10g1418 1061 Pfam Regulator of chromosome condensation (RCC1) repeat 315 363 IPR000408 -
Acco10g1418 1061 Pfam Regulator of chromosome condensation (RCC1) repeat 422 470 IPR000408 -
Acco10g1418 1061 Pfam Regulator of chromosome condensation (RCC1) repeat 536 584 IPR000408 -
Acco10g1418 1061 Pfam Regulator of chromosome condensation (RCC1) repeat 367 418 IPR000408 -
Acco10g1418 1061 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 460 470 IPR000408 -
Acco10g1418 1061 SUPERFAMILY RCC1/BLIP-II 267 640 IPR009091 -
Acco10g1418 1061 SUPERFAMILY FYVE/PHD zinc finger 644 717 IPR011011 -
Acco10g1418 1061 Coils Coil 872 892 - -
Acco10g1418 1061 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 643 713 IPR013083 -
Acco10g1418 1061 SMART PH_update 24 130 IPR001849 -
Acco10g1418 1061 Pfam FYVE zinc finger 646 706 IPR000306 GO:0046872
Acco10g1418 1061 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 588 639 IPR000408 -
Acco10g1418 1061 SMART fyve_4 638 707 IPR000306 GO:0046872
Acco10g1418 1061 PRINTS Chromosome condensation regulator RCC1 signature 317 333 IPR000408 -
Acco10g1418 1061 PRINTS Chromosome condensation regulator RCC1 signature 367 383 IPR000408 -
Acco10g1418 1061 PRINTS Chromosome condensation regulator RCC1 signature 408 424 IPR000408 -
Acco10g1418 1061 PRINTS Chromosome condensation regulator RCC1 signature 525 543 IPR000408 -
Acco10g1418 1061 PRINTS Chromosome condensation regulator RCC1 signature 298 311 IPR000408 -
Acco10g1418 1061 PRINTS Chromosome condensation regulator RCC1 signature 424 438 IPR000408 -
Acco10g1418 1061 PRINTS Chromosome condensation regulator RCC1 signature 583 604 IPR000408 -
Acco10g1418 1061 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 484 535 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g1418 Acco-ChrAcco10 27968348 27974193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g1418 876 1054 Major Intrinsic Protein MIP AT1G31880 31.351 2.82e-10 61.6