Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g1415 ATGTCAGGCAAACAAGGTTTTGTTTGGTTGGAAGGGAAAAAGTTCGAGGGTAGAAGAAGAACATTGAATCGTGTCCTAGTTCTGAATCCGCTGAAATTTGCTGCTATGACTATTCAGGATCGTAATGAAGTTTTTAGATACAATGGTCTTCCGCTAGAAAATGGAGGATCTCTGAGTTCTGGACTAGGTTCTGCTTCGCGTGTTGAACAAAAGGATCAGATTTCTCGTGGAAAAGAACGTGCTCCAAAGGTAAGGAAACCATACACCATCACGAAACAGAGGGAGCGTTGGACAGACGAAGAGCATGAGAAATTCATTGAAGCTCTGAAGCTCTATGGCAGGGCATGGCGAAAGATTGAAGAACATATTGGCACAAAGACAGCAGTTCAGATTCGAAGCCATGCTCAGAAGTATTTCACAAAGGTTGTTCGCGAGTCTAGTGGGAGAAGCATAATAAGCACAGTGGAGTCCATTGAAATCCCACCTCCACGACCAAAGAAAAGGCCTTCTCATCCTTACCCGCGCAAGCGGGTAGTGTTCCCTGATACAGCAATCTCCAATGAAGGCAAGGCACTGAGATCTATTTCTCTCAAGTCATTAGAATCTGATCAAGAAAACCAATCTCCAAAATCAGTGTTATCTACGATTGGCTTAGACACTCCTGGATACTCTGAACCAAATGGAACTTCATCTGAGGAAGATGGTTCTGCCTCAGATGCGCTTGATCCAGAAACTCCTCTGAATTTTGAGCTTTTCCCTAAGGGAAGTGTTTATGCGAAAGAAGACGCAGCAGAGGAACCTTGTGGTCGGGTTGTTAAGCTTTTTGGGGCTAATCTTCTGGCTATAGATATTTGTCCAACAAAGAAGAATTCTGATATAACACAAGCTCCTGCTGGTTTTGCTCCTAGGAGAACTCTAGTTGAAGATAAAGTTGAAAAGGAATTATCTTGGGGTGGTTCAAACATGACTAGCTCTGTAAATGATGGTGACATTATTGATGAAAACCCAGATGATGTTGAAGCCAGAAGTCACGTGCATTTCTCTGGAAAGGGAGAAAAATTGAGTCTTTTTAGCGACTTGACAACACCCAGAGAACCATCAACCGTATCTGAATTATTGGTGAGGTCCAAAGGGTTTGTGCCATATAAGAAATTCTTAGCAGAAAGAGAAAATAAGCCCTTTCCTATAACAGCCGAGAAGAGGGATTGCCAAAGCATTCGCCTTTCATTATAG 1233 0.4274 MSGKQGFVWLEGKKFEGRRRTLNRVLVLNPLKFAAMTIQDRNEVFRYNGLPLENGGSLSSGLGSASRVEQKDQISRGKERAPKVRKPYTITKQRERWTDEEHEKFIEALKLYGRAWRKIEEHIGTKTAVQIRSHAQKYFTKVVRESSGRSIISTVESIEIPPPRPKKRPSHPYPRKRVVFPDTAISNEGKALRSISLKSLESDQENQSPKSVLSTIGLDTPGYSEPNGTSSEEDGSASDALDPETPLNFELFPKGSVYAKEDAAEEPCGRVVKLFGANLLAIDICPTKKNSDITQAPAGFAPRRTLVEDKVEKELSWGGSNMTSSVNDGDIIDENPDDVEARSHVHFSGKGEKLSLFSDLTTPREPSTVSELLVRSKGFVPYKKFLAERENKPFPITAEKRDCQSIRLSL 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g1415 410 SMART sant 93 141 IPR001005 -
Acco10g1415 410 Pfam Myb-like DNA-binding domain 94 139 IPR001005 -
Acco10g1415 410 NCBIfam myb-like DNA-binding domain, SHAQKYF class 92 141 IPR006447 GO:0003677
Acco10g1415 410 MobiDBLite consensus disorder prediction 154 180 - -
Acco10g1415 410 Gene3D - 96 143 - -
Acco10g1415 410 MobiDBLite consensus disorder prediction 58 84 - -
Acco10g1415 410 ProSiteProfiles SANT domain profile. 92 143 IPR017884 -
Acco10g1415 410 MobiDBLite consensus disorder prediction 200 236 - -
Acco10g1415 410 FunFam protein REVEILLE 6 isoform X1 96 144 - -
Acco10g1415 410 ProSiteProfiles Myb-like domain profile. 89 139 IPR001005 -
Acco10g1415 410 PANTHER SWI/SNF COMPLEX-RELATED 81 235 - -
Acco10g1415 410 MobiDBLite consensus disorder prediction 200 246 - -
Acco10g1415 410 SUPERFAMILY Homeodomain-like 88 142 IPR009057 -
Acco10g1415 410 CDD SANT 96 139 IPR001005 -
Acco10g1415 410 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 89 143 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g1415 Acco-ChrAcco10 27938069 27940695 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Acco10g1415 Myb_DNA-binding 1.3e-14 CL0123