Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g1402 ATGGTTTTATCTTGGTCCAAAAGAGTTTTTCGCCGTGCCCGTAAAGGAAATGACCTTCCCGGCGGCGCCGCCAACGCCAACGACGGAGACTTGGACGCCGTGGACGTCGACGTCGTTGTCCCCACTCACTTCCGGTGCCCCATCACTCTGGACTTGATGTCAGATCCGGTGACTTTATCCACCGGAATCACCTACGACAGGGACAGCATCGAGAAGTGGGTAGAATCTGGAAACAGAACTTGCCCAGTCACCAATCAGCCTTTGACGACCTTCGACTTGATCCCCAACCACGCCATTCGAAGAATGATCCAAGAATGGTGCGTCGAGCATCGTTCCTCCGGCTTCGAAAGAATCCCTACCCCGAGAATCCCGGTGACGCAGTACGAGGTTTCAGAGATCTGTACCAAAATAATATCGGCAACGCAGCATGGTGACTACAACAAGTGCCAACAGTTGGTCGGTAAAATCATGATTTGGGGCCAAGAGAGCGAAAGAAACAAAAAGTGTATCGCTGAAAACGAGGCTGCTGCCACTGCATTAGCCAACGCCTTCAGTTCTTTCTCAAACGCCTCAATTGAGAAAAACTTAGGCCTTCTAGAGAACATTCTTGGGATTCTAACATGGATTTTTCCCAAGGTACAACAAGGTTATACTCAAATTCAAACACAGTCAATGTTGAGTTCTGAAGCGTCATTACGTTGCATGGTTTGGTTCCTCAACAGTAAAGACCTATCATCAAGGCAAAACGCAGCGTTGGTTTTGAAGCAAGTACCTACAGAGCCATTAGCGAAAACTAAAGGTGTGATTGAAGCTTTAGTGAAGATGATTAAAGAACCTGTAGGTCCTTCTGCGACAAAAGCAAGCCTGAAGGCAATTTTTCAGATGGTTTCTTCATCAAATATTGAGAAAGAGAGCATCATAAAAAGATGTGTTGAACTAGGCCTTGTTACGTCGTTGCTTGAAGCACTAGTGGACGGGGATAGAGGGATATGTGAGAAGGCTTTGGGAGTGTTGGACTGTTTGTGTGATTATAACCAAGGGAAGGAAGTGGCTAAGGCTAATGTGTTGACTTTGCCTCTCGTGGTGAAGAAGATATTGAGGGTTTCTGGGTTGGCTTCTGATTTTGGAGTTTCTATTCTTTGGAAACTTTTTGACAAAAGAGATGAAGATTTGGTGAAGGAGGCGCTTCAAGTGGGAGCGTTTCAGAAGGTTCTGGTTTTGTTGCAGGTTGGGTGTGAAGAGAAAACCAAGGGAAAGGCCACTGATTTGTTGAAGGTTTTGAATGTTTATAAGAATACAGTGGACTGTGTTGATTCGTCTTTGGATTTGAAGTATCTTAAGAAGTCCTTTTGA 1353 0.4545 MVLSWSKRVFRRARKGNDLPGGAANANDGDLDAVDVDVVVPTHFRCPITLDLMSDPVTLSTGITYDRDSIEKWVESGNRTCPVTNQPLTTFDLIPNHAIRRMIQEWCVEHRSSGFERIPTPRIPVTQYEVSEICTKIISATQHGDYNKCQQLVGKIMIWGQESERNKKCIAENEAAATALANAFSSFSNASIEKNLGLLENILGILTWIFPKVQQGYTQIQTQSMLSSEASLRCMVWFLNSKDLSSRQNAALVLKQVPTEPLAKTKGVIEALVKMIKEPVGPSATKASLKAIFQMVSSSNIEKESIIKRCVELGLVTSLLEALVDGDRGICEKALGVLDCLCDYNQGKEVAKANVLTLPLVVKKILRVSGLASDFGVSILWKLFDKRDEDLVKEALQVGAFQKVLVLLQVGCEEKTKGKATDLLKVLNVYKNTVDCVDSSLDLKYLKKSF 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g1402 450 Gene3D - 121 438 IPR011989 -
Acco10g1402 450 SUPERFAMILY RING/U-box 38 115 - -
Acco10g1402 450 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 117 IPR013083 -
Acco10g1402 450 PANTHER WDSAM1 PROTEIN 39 432 IPR045185 GO:0061630
Acco10g1402 450 FunFam RING-type E3 ubiquitin transferase 40 111 - -
Acco10g1402 450 CDD RING-Ubox_PUB 41 93 IPR045210 -
Acco10g1402 450 SMART Ubox_2 43 106 IPR003613 GO:0004842|GO:0016567
Acco10g1402 450 ProSiteProfiles U-box domain profile. 39 113 IPR003613 GO:0004842|GO:0016567
Acco10g1402 450 SUPERFAMILY ARM repeat 134 398 IPR016024 -
Acco10g1402 450 Pfam U-box domain 40 111 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g1402 Acco-ChrAcco10 27796466 27797818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g1402 37 450 U-box Gene Family AT5G37490 47.743 4.48e-123 363