Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g1401 ATGACTAGAAAGAAGGTTAAGCTAGCGTTCATAGCAAACGACTCTGCGAGAAAAGCCACTTACAAGAAAAGAAAGAAGGGTCTGATCAAGAAGATCGACGAACTCACCACTCTTTGTGGAATCGAGGCCTGTGCGATCGTCTATAGTCCGTACGACTCTCAGCCGGAGGTTTGGCCATCGCCGTTCGGGGCCCAACGCGTACTATCAAAGTTTCGGAGGATGCCGGAACTGGAACAGAGCAAGAAGATGGTTAACCAGGAAGGGTTTCTGAAACAGAGGATTTTGAAAGCGAAGGAGCAGTTGAAAAAACAGAGAAAGGACAACAGAGAGAAGGAGATGACCCAGGTGATGTATCAGTATCTCAATGCAGGGAAGGTTCTTCATAACATGACAATGATCGATCTCAACGATCTGGCTTGGCTCGTCGAACAGAATCTGAAGGATGTTAACCGGAGGATCGAGTCCTTAGATAAGAGGGCTCAGAGTCAGAGGGCGGCTGATGTGGCGGCAATGGCGGCGGCTGACGTGGTGGCGAGGGGCCGAGATAAGGCAAAGGCAGAGCAGGCGGATGGGATGGAGGTGGCTGCCGGCGGGGATGGGTCGAAGCAGCAGTGGTATATGGAGATGATGAATGGTGGTGTTGATGAAACGATGTCGTTCGGAGATGTGAGTCATTCGAATGCGTTTTGGCACAATAACTATTTCCCTTGA 711 0.5035 MTRKKVKLAFIANDSARKATYKKRKKGLIKKIDELTTLCGIEACAIVYSPYDSQPEVWPSPFGAQRVLSKFRRMPELEQSKKMVNQEGFLKQRILKAKEQLKKQRKDNREKEMTQVMYQYLNAGKVLHNMTMIDLNDLAWLVEQNLKDVNRRIESLDKRAQSQRAADVAAMAAADVVARGRDKAKAEQADGMEVAAGGDGSKQQWYMEMMNGGVDETMSFGDVSHSNAFWHNNYFP 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g1401 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Acco10g1401 236 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Acco10g1401 236 PANTHER MADS BOX PROTEIN 3 148 - -
Acco10g1401 236 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Acco10g1401 236 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Acco10g1401 236 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Acco10g1401 236 Coils Coil 91 114 - -
Acco10g1401 236 Coils Coil 146 166 - -
Acco10g1401 236 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Acco10g1401 236 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Acco10g1401 236 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Acco10g1401 236 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Acco10g1401 236 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g1401 Acco-ChrAcco10 27786713 27787423 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g1401 1 175 Type I MADS-box Gene Family AT5G48670 61.714 3.17e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Acco10g1401 SRF-TF 6.2e-17 No_clan