Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g1399 ATGCATTCTCGTGAAAGGGCAGTTATGCCCCCAGCAATGCCTCTTCTTTTGAATCTCTCGTGGAGCGCGCCAAGTCCGAACGACTGGACCCCAGTCGTTTTAACTGAATCAGTTAAGAGAAGAATAAAAGAAGCGAAGTCTTGGGGTAATCTTCGAGCTCAAAGCGAAGCTTTAACCATGTCATTCTCTCTTCTTGAAGCGTGTAAGAAGAGAAAGAGATTGCCCAAGGTTTTCAGGTTTCACTCTTTCGCCGACCCTGGTTGCCCAATCAGTCCTAACGGACCTTTTAGAGATAACATTCGTCTCTTTCTTCAAGAATGTGGCGAGCTTGAAGATTTTCACATCCAGGATATGCCTCTATGGACCACCGGTCTTATTCACGAGAAATCAAACTGTATGATTACTCTTTACACCATCGAAGAGAATGTTTGCCAATCTTCGCACCCCTTCTGCGATCATTGCCGATGTGCAGGCTGGAGCGGCCATTTTGTATCGAAGAGAAGGTACCATTTCATAATCGCCGCCGATAATAAACCGTTGACTGAAGGTTTTCTTGATGATCAGAGTTATCTCTTGCATGGAATGATTCACAGTAATGGGTACGGCCATTTGCTCTGTATTAATGGCATTGAAGGGGGTTCTAAATTTCTCAGTGGCAGAGAAATCATGGATCTGTGGGATAGGATCTGCACAATTCTTCGAACAAGGAAAATCGCAGTTGAAGATACATCAAGGAAGCGTTCAATGGATCTTCGTCTACTTCATGGAGTTGCTTATGGCCATTCTTGGTTTGGTAGGTGGGGTTACAGATTTTGTCGTGGAAGCTTCGGTGTCACAGAGTACAATTATAATGCAGCAATCGAACTTCTAAGTTCATTAGAGCTTGAAGAGGTCGTTCAATGTTTTGGTAATACAATGTGCCATAAGGAAATCAAACAAATAATTCGCCATTATAGAGACATGAGTGAGACCCAGTTGATTACAATCAAGGATCTTCTCAGGTTTATGCTTACTGTCAAGGCTCGAACTCCTCCTCTACCCAAGAGAGTAATAGTCAGTATCACTGGTCCTCCTTCTTCAACCTTCTGTTCAAAACTCACAAGATTTGCAATGTCAAGGAAACAAAGCCCGTTAAAGGAGAAATCAGTCAGGTACAAAAAGTTCAGTTCCGCAGTGGCTAACATGGATAGTAGGTGGCCTTCAAGGCGACTAGAATACGCAGCCCAAGTGATAGTAGACGCTTTGAAAGAAAACAAAGCAAATAGTTCAGGTTCTGGTGGGATGACAAGGCAAGATGTGAGAGATGCAGCTAGGCTCCACATTGGCGACACAGGCTTGCTGGATTATGTGCTGAAATCACTGAATAATATGATTGTCGGAAACTATATTGTTCGTCGAATGGTCAACCCGACAACTCGAATCCTAGAGTATAACATTCATGAGCCTGGAAATGGGTCTAAATCCCCTCAACCACATCCTGGGCTAAAGGTTTTTAAATCTATAGAGCCTCCACCAGCAGAGCCAGAACAAGTGCCAGGAATTGATGTTTATAGTGATGTAGCTTATCTGTACAAGAATGTCCTATTGGGAGATTCAGAACAAATAGACTTGGCAGTTCAAACGATTCTAGACAGCAGGCATTTTGTGAAGGAATGGTTAATAGTCGATGAAATAGAGCAAGTTTTGACATTCATATGCCACTTGATGCCCAGCTTTGTTGATGAAAATCCAGAGTTCATGAACAGGGGCGTGTCTCCAGGTGAGATAGTGACAGTCCCACTGCATGCAACAGTTGGAGACTTGAAGCAAGCAGCTGAGACTGCTCTGAGGGATACTTACTGTATTGCAGATGGACTCATGGTGCTAGAGATAGTAGAGTTGGCGGGAATAAGTGATGAGGAAGTGCTTTTTGGAGTAGTAGAATCTGGTGTGGATCTGCGTATTAGGGGAATTGGTTCAAATATACTGACTCCATTAAAGTATCAGGGAGGATCAGACACTTGGAAGGTGAGATGTGAATGTGGAGCTCAAGATGATGATGGTGAGAGAATGGTGGCTTGTGACATGTGTGAGGTGTGGCAGCACACACGGTGCTGTGGGATCGATGACTCTGAGACTGTGCCACCATTGCTTGTGTGCTCTGCTTGCTGTAATTCACTTGTACCTCCAAGGGTTGATTCTGCCTTTTGCAACGATGATAGCATGGACATTGCATGTGCTGATGATTTTCTGATCTCCCCAGAGCCTAGTAACCTTCTGGAATATGGGTATGGGTACTGA 2280 0.4404 MHSRERAVMPPAMPLLLNLSWSAPSPNDWTPVVLTESVKRRIKEAKSWGNLRAQSEALTMSFSLLEACKKRKRLPKVFRFHSFADPGCPISPNGPFRDNIRLFLQECGELEDFHIQDMPLWTTGLIHEKSNCMITLYTIEENVCQSSHPFCDHCRCAGWSGHFVSKRRYHFIIAADNKPLTEGFLDDQSYLLHGMIHSNGYGHLLCINGIEGGSKFLSGREIMDLWDRICTILRTRKIAVEDTSRKRSMDLRLLHGVAYGHSWFGRWGYRFCRGSFGVTEYNYNAAIELLSSLELEEVVQCFGNTMCHKEIKQIIRHYRDMSETQLITIKDLLRFMLTVKARTPPLPKRVIVSITGPPSSTFCSKLTRFAMSRKQSPLKEKSVRYKKFSSAVANMDSRWPSRRLEYAAQVIVDALKENKANSSGSGGMTRQDVRDAARLHIGDTGLLDYVLKSLNNMIVGNYIVRRMVNPTTRILEYNIHEPGNGSKSPQPHPGLKVFKSIEPPPAEPEQVPGIDVYSDVAYLYKNVLLGDSEQIDLAVQTILDSRHFVKEWLIVDEIEQVLTFICHLMPSFVDENPEFMNRGVSPGEIVTVPLHATVGDLKQAAETALRDTYCIADGLMVLEIVELAGISDEEVLFGVVESGVDLRIRGIGSNILTPLKYQGGSDTWKVRCECGAQDDDGERMVACDMCEVWQHTRCCGIDDSETVPPLLVCSACCNSLVPPRVDSAFCNDDSMDIACADDFLISPEPSNLLEYGYGY 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g1399 759 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 659 720 IPR013083 -
Acco10g1399 759 CDD PHD_MMD1_like 672 716 - -
Acco10g1399 759 ProSitePatterns Zinc finger PHD-type signature. 672 716 IPR019786 -
Acco10g1399 759 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 68 724 - -
Acco10g1399 759 SMART PHD_3 671 717 IPR001965 -
Acco10g1399 759 SUPERFAMILY FYVE/PHD zinc finger 657 721 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g1399 Acco-ChrAcco10 27774176 27776854 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g1399 69 722 PHD Transcription Factor Family AT5G22260 34.410 3.45e-115 361