Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g1372 ATGGCATACCACCAGATCCAGGGTCATGCGCCCACGCCTGGATCCAATTCAAGTTCTGGATTTCAACAAATAAACTCCCCTTTTGGCGATACCACTTTTACCAAGGTATTTGTTGGAGGATTGGCGTGGGAGACCCAGAGCGAAACCATGCGCCGATACTTTGAGCAGTTTGGCGACATTCTTGAAGCTGTTGTAATCACTGATAGGAATACAGGCCGATCCAAAGGCTACGGTTTTGTGACTTTCCGGGATCCTGAGGCTGCTAGAAGAGCCTGTGCTGATCCAACTCCTGTCATTGATGGAAGGAGGGCCAATTGTAACTTGGCTTCACTTGGACGACCATGGCCTCCTCTTCCATATGGACGGGTAAGGCCAGCTCCTGCTTACATTGGAAATGTGCAACCAGCCAGAGGTGCCTATGTTGGAGGTTTTGGCTATCAGCAACCACCTTCTTACAGCTATCAGCAAGGATTGGTTTATCCTCATTATGGGTATACGGCATATGGACCTGAATATGCATATCCACAGGGTTTGTACAACCCATATATGGGCCAGCAGTATGTTCAGATATATGGAGTGCCTGGTGCAGTGAATAATACTATTTATCCTTATGGGCAATTAGGTCAGGCTATTCCCAGTAGTCATGGTTATCCAGGAATGCAGGGCTATGCTGTAACTGGCCACCACATTGTACCTTATGGTGGAACCAATGTTAATGCTCTGACTACTTCACCTATGCCTACCATTCAAGTACCATATCCCAGTGGAATTGCTGCACCAATTCCAGGACAACCCCAATTTATTGTCCCTGCGCCTTCTCAGTTTATGCAAGGAACTGGTCCTGACCAAGCAGCTGGGTATCCTTTGTTTGCAGCAGGACTAAGAGCAGTGGATCTGCTACAATGTGTGGCGGGCTTCCAATCTAGCCTTGCAAGTTATATATATTGCATTCTAGAGGTTATATTTAGTCATGCTCACCATCAAGTTGGGTCGGAGGTGCTCCAGATGGCAGAGAAGGAAACTGGAAGATGCAGGCTGCATTTCCATTTGGACATTTATATAATGTATTTATACCCATGCTATTATCGCTCAGGAAGAGTGGCAGTAGTATGGATCAATGGGTGCTGGAATAGGTTTCCAGCAGTCATGTAG 1152 0.467 MAYHQIQGHAPTPGSNSSSGFQQINSPFGDTTFTKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDRNTGRSKGYGFVTFRDPEAARRACADPTPVIDGRRANCNLASLGRPWPPLPYGRVRPAPAYIGNVQPARGAYVGGFGYQQPPSYSYQQGLVYPHYGYTAYGPEYAYPQGLYNPYMGQQYVQIYGVPGAVNNTIYPYGQLGQAIPSSHGYPGMQGYAVTGHHIVPYGGTNVNALTTSPMPTIQVPYPSGIAAPIPGQPQFIVPAPSQFMQGTGPDQAAGYPLFAAGLRAVDLLQCVAGFQSSLASYIYCILEVIFSHAHHQVGSEVLQMAEKETGRCRLHFHLDIYIMYLYPCYYRSGRVAVVWINGCWNRFPAVM 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g1372 383 SMART rrm1_1 35 107 IPR000504 GO:0003723
Acco10g1372 383 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 28 114 - -
Acco10g1372 383 Gene3D - 3 116 IPR012677 -
Acco10g1372 383 PANTHER BOULE-RELATED 13 248 - -
Acco10g1372 383 SUPERFAMILY RNA-binding domain, RBD 13 121 IPR035979 GO:0003676
Acco10g1372 383 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 92 IPR000504 GO:0003723
Acco10g1372 383 MobiDBLite consensus disorder prediction 9 24 - -
Acco10g1372 383 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 111 IPR000504 GO:0003723
Acco10g1372 383 CDD RRM_RBM24_RBM38_like 34 109 - -
Acco10g1372 383 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g1372 Acco-ChrAcco10 27508859 27512469 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g1372 24 166 C2H2 Transcription Factor Family AT2G19380 29.870 3.12e-15 75.5