Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g1356 ATGCTAATCAAGAACGGCATATCCTGCCTGGTGGTGATCTCAACGCCAAAACGAAACAAAAACAAGGTGAAATTGATCCATCTCAGAGTTGCGAAGAAGTTATTGGACTTGCTTTCGCAGTTAAAGTGGAGCATTTCCATCACCAAGAATGTACTTAATCTTCTAGAAATGGCATTAGCAACCAAGCAAGGAAGGTTGCAGATTTGTAGGGACCCAAATTGCATGGCATTGATACTGCAGAAGAGAGCTTCAGGTTCATCCATGGAATCTCTATTCTCACTTCCGCTCATTCCTCCAACTTCATCTCTAACTGATGTCGTTGCTTTTAATCACTCTATTTCTGTAAAATTAGACTACTCCAATTTTCTCTTATGGCGTAAACAAATTCAGAGTGCTATTCGTGGTTATGCTCTTGAATCCTTTCTCGATTCATCTATTTCTCCTCCTGAACAATACGAATATGATGGCGATCAACGAATTGCTCTTACTCCAACTTACATCAACCCTAGTCATCCAACTTCTCTTGTTCCCAAATCGTCGCTCTCCCGTGGGAATCCTCCTCTCCGACTCACCATCCTGGTACTTATCATCATGAAAGGCGACAAATCGAAGGCTGAATCTAAGAAAGCTGATGCCAAGCTTGCTGTGAATAAGAAGGGCGCCGCCGCCTCCAAGGCAGGCAGGAAACCAAGCAAGGGAAAGGCGGCGAAAGATCCTAACAAACCAAAGAGGCCGGCCAGTGCCTTCTTTGTTTTCATGGAGGAGTTTAGGAAGCAATTTAACAAGGAAAATCCTAACAACAAAGCAGTGTCGGCTGTTGGCAAAGCTGCTGGGGCTAAATGGAAGTCCATGTCTGATGCTGAGAAAGCACCCTATGTGGCTAAAGCAGAGAAACGTAAGACTGAGTATGAGAAGAATATGAAAGCCTATAATAAGAAACAGGCGGAAGGTCCCAATGAAGAAGAATCTGACAAGTCAATGTCTGAGGTTAATGATGCGGAGGGAGGACATGAAGATGGCAGTGATGAGGAGGAAGATGACGAGTAG 1047 0.4413 MLIKNGISCLVVISTPKRNKNKVKLIHLRVAKKLLDLLSQLKWSISITKNVLNLLEMALATKQGRLQICRDPNCMALILQKRASGSSMESLFSLPLIPPTSSLTDVVAFNHSISVKLDYSNFLLWRKQIQSAIRGYALESFLDSSISPPEQYEYDGDQRIALTPTYINPSHPTSLVPKSSLSRGNPPLRLTILVLIIMKGDKSKAESKKADAKLAVNKKGAAASKAGRKPSKGKAAKDPNKPKRPASAFFVFMEEFRKQFNKENPNNKAVSAVGKAAGAKWKSMSDAEKAPYVAKAEKRKTEYEKNMKAYNKKQAEGPNEEESDKSMSEVNDAEGGHEDGSDEEEDDE 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g1356 348 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 242 311 IPR009071 -
Acco10g1356 348 MobiDBLite consensus disorder prediction 291 335 - -
Acco10g1356 348 CDD HMG-box_AtHMGB1-like 243 303 - -
Acco10g1356 348 Gene3D High mobility group box domain 225 326 IPR036910 -
Acco10g1356 348 MobiDBLite consensus disorder prediction 276 348 - -
Acco10g1356 348 Coils Coil 293 313 - -
Acco10g1356 348 SMART hmgende2 241 312 IPR009071 -
Acco10g1356 348 MobiDBLite consensus disorder prediction 207 244 - -
Acco10g1356 348 SUPERFAMILY HMG-box 230 317 IPR036910 -
Acco10g1356 348 Pfam HMG (high mobility group) box 242 311 IPR009071 -
Acco10g1356 348 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 198 345 IPR031061 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g1356 Acco-ChrAcco10 27375381 27383269 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Acco10g1356 HMG_box 5e-23 CL0114