Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g1355 ATGGCAACACCGGGGCCACTACTGGAAACACTGGAGTGGGCCCTAGCCTCCCCCAACTTCTCTTGTCCCAGACCCGTTTCTCTCTCCTGTGGGAATCCTAGCCTCTCAATTCACCATCCTGTTTTCGACATGAAAGGTGGCAAATCGAAGGCTGAATCTAAGAGAGCAGATGCTAAGCTTGCTGTTAATAAGAAGGGCGCCCCCGCCACCAAGGCTGGCAGGAAAGTAAGCAAGGGCAAGGCGGCGAAAGACCCTAACAAACCAAAGAGACCAGCCAGTGCCTTCTTTGTTTTCATGGAGGAATTTAGGAAGCAGTTTAACAAGGAAAATCCTGACAACAAAGCAGTGTCTGCTGTTGGCAAAGCTGCTGGGGCAAAATGGAAGTCAATGTCTGATGCTGAGAAAGCACCTTATGTAGCCAAAGCAGAGAAGCGAAAGGTTGACTATGAGAAGAATATGAAAGCGTATAATAAGAGACAGGCTGAAGGAACAAATGCTGCAGATGAAGAAGAATCTGAGAAATCAGTTTCTGAGGTGAATGATGAAGATGAAGGAGATGAAGAGGGCAGTGATGAGGAGGAAGACGACGAGTAG 594 0.4798 MATPGPLLETLEWALASPNFSCPRPVSLSCGNPSLSIHHPVFDMKGGKSKAESKRADAKLAVNKKGAPATKAGRKVSKGKAAKDPNKPKRPASAFFVFMEEFRKQFNKENPDNKAVSAVGKAAGAKWKSMSDAEKAPYVAKAEKRKVDYEKNMKAYNKRQAEGTNAADEEESEKSVSEVNDEDEGDEEGSDEEEDDE 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g1355 197 Coils Coil 139 159 - -
Acco10g1355 197 SMART hmgende2 87 158 IPR009071 -
Acco10g1355 197 Pfam HMG (high mobility group) box 88 157 IPR009071 -
Acco10g1355 197 MobiDBLite consensus disorder prediction 122 197 - -
Acco10g1355 197 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 88 157 IPR009071 -
Acco10g1355 197 MobiDBLite consensus disorder prediction 137 173 - -
Acco10g1355 197 Gene3D High mobility group box domain 72 179 IPR036910 -
Acco10g1355 197 MobiDBLite consensus disorder prediction 63 90 - -
Acco10g1355 197 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 44 192 IPR031061 -
Acco10g1355 197 MobiDBLite consensus disorder prediction 174 197 - -
Acco10g1355 197 SUPERFAMILY HMG-box 75 162 IPR036910 -
Acco10g1355 197 CDD HMG-box_AtHMGB1-like 89 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g1355 Acco-ChrAcco10 27369907 27374021 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Acco10g1355 HMG_box 1.4e-23 CL0114