Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g1323 ATGTCTCGAGATGTTGAGATGAAAGATCGCACAACTTCTTCGCATTCTGTTTCTTCAGCTGTTCCATCTGCTTTCCAGCATTTAAAGGAGATAGTATCACTTATTGAGACCGGTTCGTACTCTAAGGAAGTTCGTAGAATTGCTCGTGCCGTTCGCCTTACAACTTTGTTGAGGCGCAAATTGACAGCACCGGTGCTCTTATCTTTTATCGATTATCTTACTTGTTCGGGTTCTGAGCCTCGCGCCAGATTGTCTGCCTATCTTCCCGAGGAAGATCGTCAAGAGATGGAAGTAGATACTGCAACATCTACTGTTCCATCTTCAGCCAAGCACTTATTGCCTGAGATGGAGATGTACTGTTACTTGCTCATTCTACTATTTCTGATTGATCAGAAGAGATATAAGGAAGCCAAAGCTTGTTCTTCAGAAAGCATTGCCCAAGTGAAGAAACATAACAGACCAACTGTTGATGTTATTGCAGCCAGACTGTACTTCTATTATTCATATATTCATGAACTCACAGGAGATCTTGCAGAAATTCGGGGTAACCTTCTTGCATTGCACCAGATTGCTACCCTTCACCATGATGAGCTTGGTCAGGAAACACTTCTTAATTTGTTGCTTCGCAACTACCTCCACTACAACCTATTTGATCAGGCGGAGAAGTTGAGATCTAAGGCGCAACGATTTGAAGCACATTCAAACCAGCAGTTCTGTCGATATCTCTTCTACCTTGGGAAAATTCGAACAATTCAGTTGGAGTACACTGATGCAAAAGAGTCTCTCCTGCAAGCTGCTCGCAAGGCTCCGGTTGCGGCACTTGGTTTTCGAATTCAGTGTAATAAGTGGGCTGTAATAGTGCGTTTGCTGTTGGGAGAAATACCTGAGAGGACCATCTTCATGCAGAAAGGAATGGAGAAAGCTTTGAGGCCTTACTTTGAGCTTACAAATGCTGTTCGAATTGGAGACCTGGAGCTATTCAGGAATGTTGCTGATAACTTTGCCACTACTTTTAGGGCTGATGGAATTCATAATTTGATTGTTAGGTTGCGTCAAAACGTCATTAGGACTGGTTTACGAAACATTAGCCTTTCTTATTCTCGTATCTCGCTTGCTGATGTGGCACAAAGATTAAGGTTAAACTCTGCAAACCTCATTGCTGATGCTGAGAGCATTGTGGCCAAGGCTATCAGAGATGGTGCAATTGATGCTACATTGGATCATGGTAATGGCTGGATAGTATCTAAGGAAACTGTAGATTTATACTCCACTACTGAACCTCAACTGTCTTTTAATTCTCGAATTGCCTTCTGTCTTGAACTGCACAATGCGGCCATCCGAGCACTGCGTTTCCCACCAAACGCTTACAATGACAAGGAAAGCGCTGAGAAGCGGAGAGAAAGGCAGCAGCAGGAGCAAGAACTAGCTAAGCACATTCAAGAGGATGATGATGATGATTTCTGA 1464 0.4331 MSRDVEMKDRTTSSHSVSSAVPSAFQHLKEIVSLIETGSYSKEVRRIARAVRLTTLLRRKLTAPVLLSFIDYLTCSGSEPRARLSAYLPEEDRQEMEVDTATSTVPSSAKHLLPEMEMYCYLLILLFLIDQKRYKEAKACSSESIAQVKKHNRPTVDVIAARLYFYYSYIHELTGDLAEIRGNLLALHQIATLHHDELGQETLLNLLLRNYLHYNLFDQAEKLRSKAQRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAALGFRIQCNKWAVIVRLLLGEIPERTIFMQKGMEKALRPYFELTNAVRIGDLELFRNVADNFATTFRADGIHNLIVRLRQNVIRTGLRNISLSYSRISLADVAQRLRLNSANLIADAESIVAKAIRDGAIDATLDHGNGWIVSKETVDLYSTTEPQLSFNSRIAFCLELHNAAIRALRFPPNAYNDKESAEKRRERQQQEQELAKHIQEDDDDDF 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g1323 487 ProSiteProfiles PCI domain profile. 239 420 IPR000717 -
Acco10g1323 487 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 345 438 IPR000717 -
Acco10g1323 487 Pfam PCI domain 311 416 IPR000717 -
Acco10g1323 487 Gene3D - 82 438 - -
Acco10g1323 487 SMART PCI/PINT associated module 174 345 - -
Acco10g1323 487 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 12 482 - -
Acco10g1323 487 MobiDBLite consensus disorder prediction 456 487 - -
Acco10g1323 487 MobiDBLite consensus disorder prediction 457 480 - -
Acco10g1323 487 Pfam Proteasome regulatory subunit C-terminal 420 486 IPR013586 GO:0000502|GO:0030234|GO:0042176
Acco10g1323 487 Coils Coil 459 481 - -
Acco10g1323 487 FunFam 26S proteasome non-ATPase regulatory subunit 3 120 443 - -
Acco10g1323 487 SUPERFAMILY "Winged helix" DNA-binding domain 344 421 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g1323 Acco-ChrAcco10 27101106 27105375 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco05g2995 05 44520475 44523860 Acco10g1323 10 27101106 27105375 CCT
Acco10g1323 10 27101106 27105375 Acco10g1323 10 27101106 27105375 ECH