Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g1314 ATGAAAGATTCCAAAACTGAAAAGGATAGTTTCTTCGCTGTCCCCTTCATGGGACTCCTCTGCATCACGGGTGTATCTGCAAGCCTGAAACTTCAACGTGAGTTACTTGCCATGGAAGAAGTGGAGCATGCCTCTCATAATTCGCATTCAGAACAAAACCAACAATCTAAAGAATCAAGCAAACCAGAGAGTATTTCCTTCTTTGGCTTGTTCTCTGCTGCTGATACAATTGACTATGGCTTGATGTTCTTGGGAAGTGTTGGTGCGAGTGTTCATGGAGCTGCTCTTCCTGTGTTCTTCATCTTGTTCGGTCGTATGATTGATTCTTTAGGACATCTTTCTAATCATCCTCATAAGTTGTCGTCACGCATTTCTGAGAATGCATTGTACTTGATCTATCTTGGACTGGTTGTTCTGGTATCAGCTTGGATGGGAGTTGCATTTTGGATGCAAACTGGGGAGAGGCAAACAGCTCGTTTGCGTTTTAAGTATCTACAATCAGTTCTAAAAAAGGATATAAATTTCTTTGACACTGAAGCAAGAGACGCTAACATCATTTTCCACATTTCAAGTGACGCTATATTGGTACAAGATGCTATAGGTGACAAGACAGGCCATGCTATACGTTACCTTTCACAATTCATTGTTGGATTTGCCATTGGATTTACTTCAGTATGGAAGCTTACACTGCTCACATTGGCTGTAGTTCCGTTAATAGCTGTCGCTGGAGGAGCTTATACTATAACCATGTCTACTTTGTCAGAAAAAGGCGAAGCTGCTTACGCCGAAGCTGGGAAAGTGGCAGAAGAGGTAATTTCTCAAGTTCGTACGGTTTACTCGTTTGTGGGAGAAGATAAAGCAGTTACCTCATACTCAAAATCACTTGATAATGGTCTGAAGCTAGGAAAGAAGAGTGGTTTTGCAAAAGGCATTGGGGTTGGCTTAACATATGGACTCTTGTTTTGTGCTTGGGCATTGCTTCTTTGGTACGCAAGCATACTTGTGAGGCACCATAAAACAAATGGAGGGAAAGCCTTCACAACTATCATTAATGTCATCTTTAGCGGATTTGCTCTTGGCCAAGCAGCGCCTAACCTCGCAGCGATAGCTAAAGGGCGCGCGGCTGCAGCCAATATCATGAACATGATTGCATCAGTTTCAAACACGTCAAAGAATTTGGAGAATGGGATTGTTTTGCCACAAGTTGTAGGGAAAATTGAATTTTGTGAGGTCTGCTTTTCTTACCCCTCAAGATCAAACTTGGTGTTTGAAAACTTGACCTTCACAGCAACTTCTGGGAAGACTATCGCAGTTGTTGGTCCTAGTGGTTCAGGAAAGAGCACTATCATTTCTATGATTCAAAGATTTTATGATCCCACTTCAGGTAAGATACTATTGGATGGACATGACCTGAAGAGTCTTCAATTGAAATGGTGGAGGAAACAAATGGGCTTGGTTAGCCAAGAACCATTGCTATTTGCCACAACAATATCTGAAAATATTTTACTTGGAAAAACGGATGCAAACATGGATCAAATCGTACAAGCAGCAAAAGCTGCAAATGTTCATTCTTTTATTGAAGGCTTACCTGATGGTTATCTGACTCCGGTTGGAGAAGGTGGTACACAACTTTCAGGAGGGCAGAAACAGAGAATAGCAATAGCAAGAGCAGTGCTCAGAAACCCAAAAGTATTACTTCTAGATGAGGCAACTAGTGCTCTTGATGCTGAATCAGAATTAATAGTTCAGCAGGCCCTGGAAAATTTAATGTCAAATAGGACTACAATCATCGTCGCCCACCGGTTATCAACTATTCGCGACGTGGATACAATAGTGGTGTTGAAGAATGGCAAGGTTGTAGAAAGTGGTACTCATTCAGAATTGATGTCAAAAAATGGAGACTATGTGCATTTAGTGAGTTTGCAAGCAGCATCATCAGAAAACAACAACCCCATGACAGGTTCTTCTAGTGCAATAATATCTCGTTCAGGAAGTTCAAGACATTCAAGTTACCGGGAAGCTTCAGATAACTACCAAATATACCCAGATGACCAATTGATGAAGTCCATTTCAGCAAGAGAACCTCATCATCATCAACCTAGTGAAGATCAAAAGTCCATTCCATCAATCTTAGACTTGCTAAAACTAAATGCCCCTGAATGGCCTTGTGCAGTACTTGGATCACTGGGTGCAATTATGGCAGGCATTGAAGCTCCTCTCTTTGCTCTTGGTATCACACATATTTTGACTGCATTTTACTCACCTCATGGCTCTAAAATCAAGGAAGAGGTTGATCGTGTAGCTCTTGTATTTGTCGGAGTTGCTGCTATTACTATACCTATTTATCTGCTGCAACATTACTTTTATACATTGATGGGAGAGCGTCTCACAGCCCGTGTACGCTTATTAATGTTTTCAGCTATCCTGACCAATGAAATTGCATGGTTCGACTTGGATGAGAACAATACTGGATCATTAACAGCTATGCTAGCAGCAGATGCAACATTAGTAAGAAGTGCTTTGGCTGACAGACTCTCTACTATTGTACAAAATGTAGCTCTCACTGTAACAGCATTTGCTATTGCCTTTACACTGAGTTGGAAACTAACAGCCGTGGTTGCAGCTTGCTTGCCTCTTCTTATTGGAGCTTCTATCACTGAACAACTATTTCTCAAGGGGTTTGGAGGAGATTATAGTGCAGCCTACTCCAGAGCAACTTCTTTGGCACGTGAAGCTATCTCCAATATACGAACTGTTGCTGCTTTTGGTGCAGAAGATCGAATCTCACTCCAATTTGCCACTGAATTGAACAAACCTAACAAGCAAGCACTTTTAAGAGGCCATATCTCAGGCTTTGGTTATGGTCTGACACAGTTACTTGCTTTCTGCTCTTATGCACTTGGCCTCTGGTATGCATCCATCTTGATCAAGCACAAAGAATCTCACTTTGGAGATATTATGAAGTCTTTTATGGTTTTAATCATCACAGCTCTGGCAATAGCAGAAACACTAGCTCTTACACCAGACATTGTCAAAGGATCTCAAGTTCTGGGGTCAGTTTTTGGTGTCCTCCGAAGGAGAACTTCAATCCCTCCCAACGAACCTAACTCAAAGGTGATAACCGACATGAAAGGAGAGATAGAGTTCAAAAATGTACACTTTAGCTATCCAATGAGACGTGAAATCACCATTTTTGAGAACTTTAACCTGAAAGTTAAATCAGGAAAGAGTCTTGCAGTAGTGGGGCCAAGTGGTTCTGGGAAGAGTACTGTGATCTCACTAGTCATGAGATTTTATGACCCAAATTATGGAAAGGTCTTGATCGATGGATGTGATATTAAAAGCCTGAACTTGAGATCCTTAAGACTAAGAATAGGCCTGGTTCAACAAGAACCTGCATTATTCTCCACCACAATATATGAAAACATCAAGTATGGCAAAGAAGAGGCCTCAGAAATTGAGATACTAAAGGCAGCAAAAGCTGCAAATGCTCATGAATTTATCGTCAGAATGCCTCGTGGGTATCAGACAGAGGTAGGTGAGAGAGGAGTGCAATTATCAGGAGGCCAAAAACAGAGGCTTGCAATTGCTAGAGCTATTTTGAAAGATCCATCCGTTCTCTTATTAGATGAAGCAACAAGTGCATTGGACACAGTTTCAGAGAGATTGGTCCAAGAGGCTTTGGAGAAGCTTCTGGAAGGAAGAACAACAATCTTGGTGGCACACAGATTATTAACAGTTCGAAATGCTTACAATATTGCTGTGTTACAAAATGGTAAAGTGGCTGAAATGGGTAGCCATGAGAGGTTAATTGCTCAACCTCAAAGCATTTATAAGCAGTTGGTTAGTCTACAACAAGATAATAGGACTGACCAAGCAATGAATTGA 3888 0.4131 MKDSKTEKDSFFAVPFMGLLCITGVSASLKLQRELLAMEEVEHASHNSHSEQNQQSKESSKPESISFFGLFSAADTIDYGLMFLGSVGASVHGAALPVFFILFGRMIDSLGHLSNHPHKLSSRISENALYLIYLGLVVLVSAWMGVAFWMQTGERQTARLRFKYLQSVLKKDINFFDTEARDANIIFHISSDAILVQDAIGDKTGHAIRYLSQFIVGFAIGFTSVWKLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYAEAGKVAEEVISQVRTVYSFVGEDKAVTSYSKSLDNGLKLGKKSGFAKGIGVGLTYGLLFCAWALLLWYASILVRHHKTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGRAAAANIMNMIASVSNTSKNLENGIVLPQVVGKIEFCEVCFSYPSRSNLVFENLTFTATSGKTIAVVGPSGSGKSTIISMIQRFYDPTSGKILLDGHDLKSLQLKWWRKQMGLVSQEPLLFATTISENILLGKTDANMDQIVQAAKAANVHSFIEGLPDGYLTPVGEGGTQLSGGQKQRIAIARAVLRNPKVLLLDEATSALDAESELIVQQALENLMSNRTTIIVAHRLSTIRDVDTIVVLKNGKVVESGTHSELMSKNGDYVHLVSLQAASSENNNPMTGSSSAIISRSGSSRHSSYREASDNYQIYPDDQLMKSISAREPHHHQPSEDQKSIPSILDLLKLNAPEWPCAVLGSLGAIMAGIEAPLFALGITHILTAFYSPHGSKIKEEVDRVALVFVGVAAITIPIYLLQHYFYTLMGERLTARVRLLMFSAILTNEIAWFDLDENNTGSLTAMLAADATLVRSALADRLSTIVQNVALTVTAFAIAFTLSWKLTAVVAACLPLLIGASITEQLFLKGFGGDYSAAYSRATSLAREAISNIRTVAAFGAEDRISLQFATELNKPNKQALLRGHISGFGYGLTQLLAFCSYALGLWYASILIKHKESHFGDIMKSFMVLIITALAIAETLALTPDIVKGSQVLGSVFGVLRRRTSIPPNEPNSKVITDMKGEIEFKNVHFSYPMRREITIFENFNLKVKSGKSLAVVGPSGSGKSTVISLVMRFYDPNYGKVLIDGCDIKSLNLRSLRLRIGLVQQEPALFSTTIYENIKYGKEEASEIEILKAAKAANAHEFIVRMPRGYQTEVGERGVQLSGGQKQRLAIARAILKDPSVLLLDEATSALDTVSERLVQEALEKLLEGRTTILVAHRLLTVRNAYNIAVLQNGKVAEMGSHERLIAQPQSIYKQLVSLQQDNRTDQAMN 1295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g1314 1295 Gene3D ABC transporter type 1, transmembrane domain 675 885 IPR036640 GO:0005524|GO:0016020
Acco10g1314 1295 Gene3D - 396 643 IPR027417 -
Acco10g1314 1295 Gene3D - 1037 1286 IPR027417 -
Acco10g1314 1295 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 396 642 IPR027417 -
Acco10g1314 1295 Gene3D ABC transporter type 1, transmembrane domain 69 648 IPR036640 GO:0005524|GO:0016020
Acco10g1314 1295 Gene3D ABC transporter type 1, transmembrane domain 962 1292 IPR036640 GO:0005524|GO:0016020
Acco10g1314 1295 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 83 371 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Acco10g1314 1295 FunFam ABC transporter B family member 4 396 649 - -
Acco10g1314 1295 MobiDBLite consensus disorder prediction 646 674 - -
Acco10g1314 1295 CDD ABC_6TM_Pgp_ABCB1_D1_like 82 366 - -
Acco10g1314 1295 CDD ABC_6TM_Pgp_ABCB1_D2_like 714 1030 - -
Acco10g1314 1295 FunFam ABC transporter B family member 1 69 398 - -
Acco10g1314 1295 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1047 1283 IPR003439 GO:0005524
Acco10g1314 1295 PANTHER ABC TRANSPORTER B FAMILY 47 736 IPR039421 -
Acco10g1314 1295 SUPERFAMILY ABC transporter transmembrane region 70 379 IPR036640 GO:0005524|GO:0016020
Acco10g1314 1295 SMART AAA_5 1074 1260 IPR003593 GO:0016887
Acco10g1314 1295 SMART AAA_5 432 618 IPR003593 GO:0016887
Acco10g1314 1295 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1036 1285 IPR027417 -
Acco10g1314 1295 CDD ABC_MTABC3_MDL1_MDL2 406 642 - -
Acco10g1314 1295 ProSitePatterns ABC transporters family signature. 1186 1200 IPR017871 GO:0005524|GO:0016887
Acco10g1314 1295 Pfam ABC transporter 424 572 IPR003439 GO:0005524
Acco10g1314 1295 SUPERFAMILY ABC transporter transmembrane region 713 1025 IPR036640 GO:0005524|GO:0016020
Acco10g1314 1295 Pfam ABC transporter transmembrane region 729 998 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Acco10g1314 1295 Pfam ABC transporter transmembrane region 83 355 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Acco10g1314 1295 FunFam ABC transporter B family member 4 1037 1292 - -
Acco10g1314 1295 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 725 1012 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Acco10g1314 1295 CDD ABC_MTABC3_MDL1_MDL2 1047 1285 - -
Acco10g1314 1295 FunFam ABC transporter B family member 1 704 1013 - -
Acco10g1314 1295 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 406 641 IPR003439 GO:0005524
Acco10g1314 1295 ProSitePatterns ABC transporters family signature. 544 558 IPR017871 GO:0005524|GO:0016887
Acco10g1314 1295 Pfam ABC transporter 1066 1214 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g1314 Acco-ChrAcco10 27012787 27021193 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g1314 57 1290 Calmodulin-binding Proteins AT2G36910 49.205 0.0 1207