Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g1305 ATGACACTCGAAGATTTTTTTACCTTGACTGAGATGAAAGATGGACTTACAGCCCCTTCTCGAGTGCAGGAGTTGATCTCTGTAATGCAGAAGGAGAAAGATTGTGTTGTTAAGAATGTTGGCGATGCGATGAGGCAGTGGGCTGCTGTTGCAAGCACTGTTGCTGCAACGGATAATAAAGACTGTCTTGATCTTTTCATTCAATCAGATGGGCTTTGGTTCCTTAATAGGTGGTTACAGGATGCTCAAAATGTTGGTGACACGAATGAAGGTTTCATTGAAGAGTCAATTACTGCACTTTTACGAGCAGTTGAAAAGTTGCATCTAGACCCTGAGAAGTCAAAGTCATCAGGGATTTGGGTTACTGTAAAAAATCTTCTTGGCCACCATAGCTCAAAGGTTCAGGATGGAGCAAAAGTATTATTTGACAGCTGGAAGGTGGGTGGAAATGGAGAAGCTGATTCTCATGACATGGAGCTTGTTAGAGGTGATAATGATAGCGATAAGGTTGTTGGGGAGGAAAGTCAGCCATCTGCTGCTCTGAATGAATCCATTAATGAAAAAGACCATACGGCAGGACTTGTTGCTGATGAGAAATCTCCATCGAGAAGCACAAGCAGTCTACAACCAGAAACGAATGCTAGTGTACAAATACAGGGTTCTAGGAGTCAGCTCCATTCCTCTGGAAGTTTGGATGGTGAAAACATCAAAGAGAGATCACCAGATCATCTTGCTAATGATTCAACTTCAACAAAGGAAGAAGCTGCTCCTACAAAGGAAGAATTACCTTCAAGCACTGTAAGTGAGACCCTTTCTGCTGGTTCCCATAGCTTTCCTCATCCAAAGCAAGATAATTTTGATGGAAAATCAGATGTAAATTATTCAACCAAATTGGAGAAGCAGGAACAGAATTCCAATGGTCCTCTAGAAAAACTAAGAGTATCAGAGATTTCTTTGGGGTCAAGAAAACCAGACCCTGGACCTGTTCTTAAAGATGCTAATGAAGTAGAAGCACCCGAATTTGTGAATGAACCTGTTGTGCATCATAATGTTGAAAACAATGAAGATATAGTCTGTCATAATGCTGTTGCTGCAGGCAGCATGAAGACACGTGCATCAGATAGAAAGAGTGGGGTTGATGATGCTAGAGCTCTCAAGTCTAGTAGTCCACAACTTCCAAAGGCTGCAGAAAATGATGGTGGCTGTTGTACTAATGCATTGCAGGAATCATCAGTAAGTGGTGGTATATTGGGAAAGCCTGAGGTGTTTGATGTGTCTTTCTCCAGAACAGAACGAGCCAGTGCTGTAAAGGAAGACCCAGTGCATATTAATAATGAAGGCAAGGAAAGTTCAAAAGGTTCTGATCCTATTAAACCACGAAAACATCGTAGAGGCCCTAATATGATTGACAGGAAGAGTTCTGATATTGAACTTGATTATGGCATTGTTGATGCTTTAGAAGTTGCTCGTCAAGTTGCTCAAGAAGTTGAACGGGAGGTCTGTAGCTCGTCTGAGAAAATGTCAGAAGGAGGAACTGGGCAATCGCATAGCCCAGATTCTGTAGGAAAAGAGGATGCATCCACTTGTGTTGAACCTGGGGAGGTCCAGTCCAAACAAAGTTACTCTTCTGAGATAGATGCTAAGGAGGAGAGGCATGCTAATATTTCAGATGATGGGGATTCTGAGACAGGATGTGTTCCTGACATGGAGTCCTCACACGCGATTGAATCAGCTTTAGATCCTGGAGGTAATTCAGTGAAAAATCTTTGTGCTTTTGATCTCAATGAAGAATTTGGTTCTGATGATATGGACAATTCTGCAAATGTGATGTCTGCACCAATACCTGTTGTATCTGCTTCAAAGCCTCCAGCAACACCTGGGATGCCTGTGGCCCCTTTGCGGTTTGAGGGGGCACTTGGATGGACAGGATCTGCTGCAACCAGTGCCTTTCGTCCTGCATCACCCCGTAAAAACTCTGGGAGTGAGAAGAACATTTCCATCAGTGGGAACTCTGATATTTCCAAGCAAAGGCAGGATTTCCTTGACATTGATCTGAATGTAGCTGAGAGTGAAGATGGATTGGGAAAACCAATTGCTGAATCATCTGGGCTTCCATCTGGTCAATCTTCAGCAGAACTGAGTCCTATGAGATCAAGGAGGATTGAATTGGATTTGAACAGTGCTGGTGATGATGTTGATGCTCAGCCTTCAGATCAGAGAATGGAGGGACAGCTCTTAAGTAGCAGAATTGGCCATTGGAGCCCATCACCTGCATCATCAACATCGTCAATGCAGCCTTCTGTTAGAAACATTGATTTGAATGACAGGCCGTTCCTTCAGACTGATTTGGTGGACCAAGGGCCCAGTAAGTCTTCTCATATTTTAAATGCATATGGGTTTTCTAAACCAGATGCACCTGTGATCTCTCTCTTGGGTACCAGAGTAGAAGTTGGCAGGAAAGAAACTAGGCCTTCTCCAAATGGCAAAGCTACCGAGTCAGCAATGGATTTAACAATGTCAAGAGATGGTGTTTTTGGGATGGGGCCCACAGCATCTTACGGCCATTCTCCTGCGTTTGGATATAATGGGCTAACAACAGTGTCTCCTTTGTCTTTTTCATCAACAATGTATGGTTCAGGTGGCACAGTTCCATACATGATGGACTCAAGAGGAGCCCCAGTTTTACCACAGGTGGTGGGATCTTCCCCAACTATCCTGTCATCTTACTCCCAGCCACCATTCTTGATGAACATGACCGGGGTGCAACTTGGTTTAAACGGGGTTGGGCCTTCACGTCCCAACTTTGACCTGAACACCGGCTCCGGCTTCATTGAGGGAGGAAATAGGGACGCATTGGCTGCAAGACAATTTTTCTTTGCTGGTCAGAACAGGGCTATAGAAGAGCAAATGACGAACATTCACCAGCCCTCAACAAGTTCTGGGGTTGGTGGGAAAAGAAAGGAACCAGACAGTGGGTGGGAAACCTACCCATTCAGCTACAAACAACAGCAACCTCCATGGAAGTAG 3027 0.4424 MTLEDFFTLTEMKDGLTAPSRVQELISVMQKEKDCVVKNVGDAMRQWAAVASTVAATDNKDCLDLFIQSDGLWFLNRWLQDAQNVGDTNEGFIEESITALLRAVEKLHLDPEKSKSSGIWVTVKNLLGHHSSKVQDGAKVLFDSWKVGGNGEADSHDMELVRGDNDSDKVVGEESQPSAALNESINEKDHTAGLVADEKSPSRSTSSLQPETNASVQIQGSRSQLHSSGSLDGENIKERSPDHLANDSTSTKEEAAPTKEELPSSTVSETLSAGSHSFPHPKQDNFDGKSDVNYSTKLEKQEQNSNGPLEKLRVSEISLGSRKPDPGPVLKDANEVEAPEFVNEPVVHHNVENNEDIVCHNAVAAGSMKTRASDRKSGVDDARALKSSSPQLPKAAENDGGCCTNALQESSVSGGILGKPEVFDVSFSRTERASAVKEDPVHINNEGKESSKGSDPIKPRKHRRGPNMIDRKSSDIELDYGIVDALEVARQVAQEVEREVCSSSEKMSEGGTGQSHSPDSVGKEDASTCVEPGEVQSKQSYSSEIDAKEERHANISDDGDSETGCVPDMESSHAIESALDPGGNSVKNLCAFDLNEEFGSDDMDNSANVMSAPIPVVSASKPPATPGMPVAPLRFEGALGWTGSAATSAFRPASPRKNSGSEKNISISGNSDISKQRQDFLDIDLNVAESEDGLGKPIAESSGLPSGQSSAELSPMRSRRIELDLNSAGDDVDAQPSDQRMEGQLLSSRIGHWSPSPASSTSSMQPSVRNIDLNDRPFLQTDLVDQGPSKSSHILNAYGFSKPDAPVISLLGTRVEVGRKETRPSPNGKATESAMDLTMSRDGVFGMGPTASYGHSPAFGYNGLTTVSPLSFSSTMYGSGGTVPYMMDSRGAPVLPQVVGSSPTILSSYSQPPFLMNMTGVQLGLNGVGPSRPNFDLNTGSGFIEGGNRDALAARQFFFAGQNRAIEEQMTNIHQPSTSSGVGGKRKEPDSGWETYPFSYKQQQPPWK 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g1305 1008 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 1 1008 - -
Acco10g1305 1008 ProSiteProfiles TFIIS N-terminal domain profile. 73 152 IPR017923 -
Acco10g1305 1008 MobiDBLite consensus disorder prediction 261 279 - -
Acco10g1305 1008 MobiDBLite consensus disorder prediction 505 522 - -
Acco10g1305 1008 MobiDBLite consensus disorder prediction 646 671 - -
Acco10g1305 1008 MobiDBLite consensus disorder prediction 431 472 - -
Acco10g1305 1008 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 17 148 IPR035441 -
Acco10g1305 1008 MobiDBLite consensus disorder prediction 152 291 - -
Acco10g1305 1008 MobiDBLite consensus disorder prediction 971 1008 - -
Acco10g1305 1008 MobiDBLite consensus disorder prediction 498 580 - -
Acco10g1305 1008 MobiDBLite consensus disorder prediction 693 716 - -
Acco10g1305 1008 MobiDBLite consensus disorder prediction 749 769 - -
Acco10g1305 1008 MobiDBLite consensus disorder prediction 647 671 - -
Acco10g1305 1008 MobiDBLite consensus disorder prediction 152 171 - -
Acco10g1305 1008 Pfam TFIIS helical bundle-like domain 100 146 IPR017923 -
Acco10g1305 1008 MobiDBLite consensus disorder prediction 198 231 - -
Acco10g1305 1008 MobiDBLite consensus disorder prediction 368 400 - -
Acco10g1305 1008 MobiDBLite consensus disorder prediction 232 259 - -
Acco10g1305 1008 MobiDBLite consensus disorder prediction 543 558 - -
Acco10g1305 1008 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 61 152 IPR035441 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g1305 Acco-ChrAcco10 26913963 26916989 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Acco10g1305 Med26 0.00016 No_clan