Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g1300 ATGCCTGGGAACGCGGAAACAACCAAGGCCGGCATAGATGCTTCATTGTACTCTGTTTCTGTCTACAGTTTTTCCCCATCTTTTGCACTTTGCAAAACATTGTCAAACCAAAGGACTTGGCTTGACAAGGTCGAATGCATCATCTTCGTCTTTGAAGTTTCTTCTTCATTTGTCAAACCTTATAGCTTCTTACAGATTACAAGAGCCTTCAAAGTCAAAATGAACCAAAAGGACATCGTTAGATTCTTGACGACAACTATAGATAGTTTCATTCAAGATCGGTTAATCGACAAAGAAAGAAGGATCCAACACAAAGAACAGTGTGCAGAGAGGTTAGCTGCAGAAGATGAAAGCATCGATAAAGAAAGTGAGGTTCAGTATTCTGATCAAGCAGTATTAGCAAATCTTGACTGGGGTATAGAAGCCCTTGAAGAAGCTATCAATACCTATAACATGGAAACTAAGATTGCTCGCTTAGATTATGCTGAGAAGATGTTACAAGTATGTGCCATGCTGAATCCTGATCGGAAAACCGCCGGAGTCCCAAATTTCTACCTCTCAGCTTGGGCCCACCTTAATCTCTCTTATCTATGGAAGTTGAGGAACAATGTTCAAAACTCAATTTTTCATGCTCTTGAGATGTTCATCGTTGACCCTTTTTTCTCAAGGATTGATTTTGCACCAGAGCTTTGGAAAGATCTGTTTCTTCCACATATGAGTTCCATTGTAGGTTGGTATTCAGAGGAGAGGCATAGGCTCATGATGGAAGTTATACCTGACTCTTCAGATTTGTCTTTTACAGCTGATTTTGATCAGTTCTTCAATGAGTCTTTGATATGTGCTATGAGGCCACATCAAGTAGAGAAACTGCAGAATCTGGAGAAGCTATACGGAGAGTCATTGGACAAGAACACAACACTATATGCAAAGTATTATAAGGATTGCTTTAATCCTGATTCAACAACATCCAGCAAGAAGGCTCCTATGTTACCAATCGCCGAGCCACCGATGACACCTCTGCATGAGTTGAGCTGCTCCATTCCTGATTATGTTAAATTTGGTCCTATATTGCCTAAAAGTTCAGGGTTTTCTCCTGTTCTAAAAGCTAAAGATGGTGCAAACGAAACTATCAGAGGGAATGTGACTTCCAGCCATTCACAAAAGGCAGAGAAGTCATCATCTTCATGGAGTGCTAAGGAGAAAACCATTGGAGAGTATGAAGATTCAGATGATGACCTTGATGATTCATACATTGATCGAGGTAGAAAAACTCAAACTACTGTGTCTCCTAGAATTAAGGTTGAGGATATTGAGCCAAAAGTACATCAATTGAACCAGAAGAATCAAATATATTCTCCTCCTGTTTTCTCTCCTTTGGATTCTCCAAGAGCAACTCCTAAAACTTCATCTTCACTTCATGCCATACACACTAAAGGAGAACCCAAATCTCTGCGCTTATTGTCTGGGCGTTTTTCAGACACAAGCATTTTCAACTCTTCACCAATATCTCCACACATGAGTACTGATCAGAGCATCAGCTCAGAAGATTCTGATAACGAAATAATGGGCGTGAAGAACAGTAAGAGGGAAAACCATTACTCAGAAAAGATTATGAATCATGAGAAAGACAATATTCTCTCATTCAAAGACAATTCTCTTTATGAGAGCCATGAGGGAAATAGCAGCTGTAGTTTATCACTAAAATCAGAGAAAAGCACTGTTCAATCAAGACCACCCAAAGATTTTGTTTGCCCTATCACAGGCCAGATATTTAGTGATCCTGTCACCCTTGAAACAGGTCAGACATATGAAAGAAAAGCAATTCAGGAGTGGCTCAAAACTGGAAATACAACCTGTCCCATTACGCGGCAATCTATCTCGGCTAGCATACTACCCAAAACAAACTATGTCTTGAAGAGATTGATAACTTCATGGAAAGAACAACATCCAGAACTAGTTCAGGAGTTCTCAAATTCTCCTTCTGTCAAAGATATCCCAGTGGCCTCTAGTATGCACAAAAAAACTGACTCACCAGCTCATAAGAGTGCAAATGATTATATTAGACAAAGGAGCAAAAGATTAATGCAGGTCTCTGTAGCATCATCACCAACAAGTGTGATATCTCAAGCTGAAGTTGAAACAATTATAAATCGTTTGAAACCTTATATTTCAAGTCTCTGCACATCAGAAGACTTGCAAGAATGTGAGGATTCTGTGTTGGCGATCGCTAGATTATGGAAGGACTCAAAGAATGATCCTCATATTCATTCTCATTTATCAAATCCAACTTTCATAAATGGTTTAGTGGAAATACTTTCAGCAGCTCTAAATAGAGAAGTTCTGAGAACATCAATTTATATCCTGTCTGAGCTAATTTTTGCAGATGAAAGTGTTGGAGAAATACTCTCCACTGTTGATTCTGATTTCGACTGCTTGGCTACTCTGCTTAAGAATGGTTTAGTTGAGGCTGCTGTTTTAATTTACCAACTGAGGCCAGTTTACGATCAACTCTCTGCTCATGAGCTAATACCCTCCATTGTCCAGCTGATCCAGAACAAAAATGAGGAGTTTGATGATCTTCGGTTCCTTATTCATCCCAAAGATGCAGCTTTGGCGATTCTTGAGCAGATTTTATTAGGTGGGAATGAATACAGCAGGTCCCTCAATGCTTCGAGTGTTATTTCAGCAAATGGAATTCCAATCTTGGTTAAGTATATGGAAAGGATGGAAGGAAGGAGGTCTGTCGTTTCCATTCTTCTCTGCTGTATGCAAGCTGAAAGAAGTTGCAGGAGCTTAATTGCTAATAGAATTGAATTATCTCCGGTTCTTGAATTATTTCATTCTGGAAATGACAGTGTCAGAGGAATATGTGTGGAGTTTCTCTCTCAGCTTGTTCATTTGCATAGGAGGACACTGTGCAACAAGTTATTGCAAATTATCAAGGATGAGGGAGCATTTAGTACAATGCATACATTTCTTGTGTATCTTCAGATGGCTCCTATGGAGCATCAACTAGCAGTTGCTAGTCTTCTGCTTCAGCTTGATCTCCTGGTTGAGCCGCGAAAGATGAGCATTTTCAGGGAAGAAGCTGTAGAGGTCCTGATAGAATCACTTTGGCGAAAGGACTTCTCAAACACTCAGACGAGGGCTTTAGATGCTTTACTGCATCTTATTGGGCATCTCACTTCTTCAGGAAAGTCATACACTGAAGCCTGGCTGCTTAAGATTGCAGGGTTTGACCAACCTTACAATGCTCTAATGAAAGTTGAGCAGTTGGAAAAACATGACAATGATTTGGTAGCAACAATGGAGGGTGAAGAAAATGCTATGAGCTCTTGGCAGAAAAGGGTGGCTTTTGTTCTTTGCAACCATGAAAAGGGTTCCATATTTAAAGCTTTAGCAGAATGTCTCAAGAGTACTTCCCTAGAGACAGCAAAATCATGTCTTGTCGTTGCCACATGGCTCACACACATGCTCTCAACCATTCCTGATACGGGTATTAGGGATGTTGCTAGAACATTCTTGCTTGAGGAACTTATAAACTTCCTCCAATCATCCAAGAACCTGGAGGAAATGAACCTAGCTACCCTTGCTTTGAAGAACTTTATCAGTGATCCAATTGCTCTTGAAGCACTAGGAACTTATGCCAAAAGCATCTATAAAACACTGAGAAAGTTGAAGAAATATTCTGTGGTGGCTGCTGATATCATGAAAGCCTTACTGAACTTAAAATCTGTTGATGTGACAGCATTGTGGAGTTGTAAGGAAGTCGTTGAGTTAGATTTGAGCTCAAATGGAGAGGTGCTTTCTTTGCTTTATGTGAATGGCCGGGTAATGAGTGGACACTCTGATGGAACCATGAAGGTGTGGGATGCCGAGAAGAGAGTATTAAGATTGGTTCAAGAAACTCATGAACACAATAAAGCTGTAACATGTCTCTACTCTTCAGGCGATAAACTGTACAGTGGCTCCTTAGACAAAACCATCCGGGTATGGACGATGAAATGTGACAAGATTCACTGTGTTAAAGTTCATGATATCAAAGAGGCTGTGTATGAGTTGATAGCAAATGATAAATTGGCATGCTATGTAACTCAAGGAACTGGAGCTAAGGTATATAATTGGTCGGAGGTTCCAAAGGTTATTAATTTCAACAAACATGTGAAGTGCCTTGCAATGTCTGGGAACAAACTATATTGTGGTTGCTCTGGTTACATGGTTCAGGAGGTAGACTTGTCAAACTATACATCAAACACAATTTTATCCGGGACAAGAAAATTGCTGGGAAAACAATTCATTCACTCCCTTCTAATTTATGATGATTTTCTTATCGCTGGTGGCTCTTCAGTTGATTCGACCGCAGGAAAGATATTGTCTTTGTCGTCCAAAGAAGTGGCGGGGTCACTCTCAACAGGCCTGGATATCCACCGTATGGCCATGAACAGTGACTTTGTATTTACAGGAAGTAAATGTGGGACTATTGAGGTATGGCTAAAAAATAAGCTAAGCAGGGTTGCTTCCATCAAAATGGCTAGTGGTCACACAAAAATCACGTCACTAGCTTCGGATTCAGATGGTGTGATGCTTTTTGTTGGTTCCTCTGACGGCAAGATCCAGGCTTGGGCTTTGGATTAG 4635 0.4035 MPGNAETTKAGIDASLYSVSVYSFSPSFALCKTLSNQRTWLDKVECIIFVFEVSSSFVKPYSFLQITRAFKVKMNQKDIVRFLTTTIDSFIQDRLIDKERRIQHKEQCAERLAAEDESIDKESEVQYSDQAVLANLDWGIEALEEAINTYNMETKIARLDYAEKMLQVCAMLNPDRKTAGVPNFYLSAWAHLNLSYLWKLRNNVQNSIFHALEMFIVDPFFSRIDFAPELWKDLFLPHMSSIVGWYSEERHRLMMEVIPDSSDLSFTADFDQFFNESLICAMRPHQVEKLQNLEKLYGESLDKNTTLYAKYYKDCFNPDSTTSSKKAPMLPIAEPPMTPLHELSCSIPDYVKFGPILPKSSGFSPVLKAKDGANETIRGNVTSSHSQKAEKSSSSWSAKEKTIGEYEDSDDDLDDSYIDRGRKTQTTVSPRIKVEDIEPKVHQLNQKNQIYSPPVFSPLDSPRATPKTSSSLHAIHTKGEPKSLRLLSGRFSDTSIFNSSPISPHMSTDQSISSEDSDNEIMGVKNSKRENHYSEKIMNHEKDNILSFKDNSLYESHEGNSSCSLSLKSEKSTVQSRPPKDFVCPITGQIFSDPVTLETGQTYERKAIQEWLKTGNTTCPITRQSISASILPKTNYVLKRLITSWKEQHPELVQEFSNSPSVKDIPVASSMHKKTDSPAHKSANDYIRQRSKRLMQVSVASSPTSVISQAEVETIINRLKPYISSLCTSEDLQECEDSVLAIARLWKDSKNDPHIHSHLSNPTFINGLVEILSAALNREVLRTSIYILSELIFADESVGEILSTVDSDFDCLATLLKNGLVEAAVLIYQLRPVYDQLSAHELIPSIVQLIQNKNEEFDDLRFLIHPKDAALAILEQILLGGNEYSRSLNASSVISANGIPILVKYMERMEGRRSVVSILLCCMQAERSCRSLIANRIELSPVLELFHSGNDSVRGICVEFLSQLVHLHRRTLCNKLLQIIKDEGAFSTMHTFLVYLQMAPMEHQLAVASLLLQLDLLVEPRKMSIFREEAVEVLIESLWRKDFSNTQTRALDALLHLIGHLTSSGKSYTEAWLLKIAGFDQPYNALMKVEQLEKHDNDLVATMEGEENAMSSWQKRVAFVLCNHEKGSIFKALAECLKSTSLETAKSCLVVATWLTHMLSTIPDTGIRDVARTFLLEELINFLQSSKNLEEMNLATLALKNFISDPIALEALGTYAKSIYKTLRKLKKYSVVAADIMKALLNLKSVDVTALWSCKEVVELDLSSNGEVLSLLYVNGRVMSGHSDGTMKVWDAEKRVLRLVQETHEHNKAVTCLYSSGDKLYSGSLDKTIRVWTMKCDKIHCVKVHDIKEAVYELIANDKLACYVTQGTGAKVYNWSEVPKVINFNKHVKCLAMSGNKLYCGCSGYMVQEVDLSNYTSNTILSGTRKLLGKQFIHSLLIYDDFLIAGGSSVDSTAGKILSLSSKEVAGSLSTGLDIHRMAMNSDFVFTGSKCGTIEVWLKNKLSRVASIKMASGHTKITSLASDSDGVMLFVGSSDGKIQAWALD 1544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g1300 1544 SUPERFAMILY WD40 repeat-like 1275 1543 IPR036322 GO:0005515
Acco10g1300 1544 Pfam U-box domain 579 649 IPR003613 GO:0004842|GO:0016567
Acco10g1300 1544 MobiDBLite consensus disorder prediction 376 400 - -
Acco10g1300 1544 ProSiteProfiles U-box domain profile. 577 652 IPR003613 GO:0004842|GO:0016567
Acco10g1300 1544 SUPERFAMILY RING/U-box 567 651 - -
Acco10g1300 1544 ProSiteProfiles Trp-Asp (WD) repeats profile. 1510 1544 IPR001680 GO:0005515
Acco10g1300 1544 MobiDBLite consensus disorder prediction 498 517 - -
Acco10g1300 1544 SMART WD40_4 1253 1291 IPR001680 GO:0005515
Acco10g1300 1544 SMART WD40_4 1462 1498 IPR001680 GO:0005515
Acco10g1300 1544 SMART WD40_4 1296 1333 IPR001680 GO:0005515
Acco10g1300 1544 SMART WD40_4 1501 1542 IPR001680 GO:0005515
Acco10g1300 1544 CDD RING-Ubox_PUB 579 631 IPR045210 -
Acco10g1300 1544 Gene3D - 1240 1544 IPR015943 GO:0005515
Acco10g1300 1544 Gene3D - 704 1206 IPR011989 -
Acco10g1300 1544 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1510 1544 - -
Acco10g1300 1544 Pfam WD domain, G-beta repeat 1512 1541 IPR001680 GO:0005515
Acco10g1300 1544 Pfam WD domain, G-beta repeat 1302 1332 IPR001680 GO:0005515
Acco10g1300 1544 SMART Ubox_2 581 645 IPR003613 GO:0004842|GO:0016567
Acco10g1300 1544 SUPERFAMILY ARM repeat 682 1242 IPR016024 -
Acco10g1300 1544 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 561 659 IPR013083 -
Acco10g1300 1544 MobiDBLite consensus disorder prediction 375 424 - -
Acco10g1300 1544 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 70 1543 - -
Acco10g1300 1544 ProSiteProfiles Trp-Asp (WD) repeats profile. 1303 1335 IPR001680 GO:0005515
Acco10g1300 1544 MobiDBLite consensus disorder prediction 451 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g1300 Acco-ChrAcco10 26858091 26865655 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g1300 560 964 U-box Gene Family AT1G23030 26.379 5.03e-20 94.4