Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g1289 ATGTCGACTTCCGAACAGGATCAAGCCCCTCGCCATCACCTCTCTCAATTCCAATTTCATCATAATCGCACTTTCACTTCTCAGCCTTTCTCCTCCTCCTCCTCTTCTTCCCTCCAATTCGCTTCTGACGATTCCCATTCTGCTTTTGCAAAGCTTGCCTTGAGTCAAAGACATGAAATTAATTCCAGGCCTCAGATGAGTAATACTGAAGTAGCTCCAAATCTGGGCAAGATAGTTAATCTTTCTCGTCTCAAAACTGAGCCTCCCATAAGTGGAAATCATTATGGTAAATCAAAAGTCTCAAGAAATGCAAAATCTGGGAATCAAAGATCAAATTCTGAGTCTTCTAATTCAACTCCAGTTAATTGCCGTTATGATAGTTCCTTAGGACTGTTAACCAAGAAATTTGTCAGTTTACTTCAGGAGGCGAAGGACGGTACCCTGGACTTAAATAAATCCGCTGAGATCTTGGAGGTTCAAAAAAGGAGAATTTATGATATTACAAATGTTCTTGAAGGAATAGGATTGATAGAAAAAACATCAAAGAACCATATACAGTGGAAGGGATACGATGGACTGGGGCCAGGCGAACTTGATGGTCAAATCACTAAATTAAAGTCTGAAGTTGAAGGTCTATATTCTGAGGAATGCCGACTTGATGATACTATAAGGAAAAAACAAGAGCTACTAAGAACTTTGGAGGAAAAAGAAAACCATCAAAATTACCTTTTTTTGACCGAGGAAGATATTCTTAGCCTTTCATGCTTCCAGGATCAAACACTCATTGCCATCAAGGCGCCCCAAGCTAGTTTCATTGAAATTCCTGATCCTGATGAGGATAATGATTTCCGGCAAAGGCAGTATAAAATGATCGTTAGAAGCGCCACTGGACCAATAGATTTGTACCTCTTGAGCAAACACAAAGGCAATTATGAGGATGTTACCGTCAACCCGGCTCAAGCCCTGTTAATAGATCCTTCACAGAATGGTGACCAGTGTGGATTGAAGATTGCTGGATTACGTTTAGAAAACCAAGATTCCCAGAAAAATACTTCTCAGAGTTTTAGCTTGCTGGAGTCGGAGCAATCTGTCATTCACAAAATTACACCATTGGATTTTGATATGGAAGATGACTACTGGCTCCAATCAGATCATGGAGTGACCCTAACAGATTTGTGGGCGAATGAGGAATTAGTTCACATAGATGAGGTCCTTCAAGACGATTACTCGAATGGGGGTGATGCATCTACCCAAACACCCGGCTTCCAGGGCAGATGTGGTCCATAG 1287 0.4126 MSTSEQDQAPRHHLSQFQFHHNRTFTSQPFSSSSSSSLQFASDDSHSAFAKLALSQRHEINSRPQMSNTEVAPNLGKIVNLSRLKTEPPISGNHYGKSKVSRNAKSGNQRSNSESSNSTPVNCRYDSSLGLLTKKFVSLLQEAKDGTLDLNKSAEILEVQKRRIYDITNVLEGIGLIEKTSKNHIQWKGYDGLGPGELDGQITKLKSEVEGLYSEECRLDDTIRKKQELLRTLEEKENHQNYLFLTEEDILSLSCFQDQTLIAIKAPQASFIEIPDPDEDNDFRQRQYKMIVRSATGPIDLYLLSKHKGNYEDVTVNPAQALLIDPSQNGDQCGLKIAGLRLENQDSQKNTSQSFSLLESEQSVIHKITPLDFDMEDDYWLQSDHGVTLTDLWANEELVHIDEVLQDDYSNGGDASTQTPGFQGRCGP 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g1289 428 CDD E2F_DD 201 307 IPR032198 GO:0046983
Acco10g1289 428 Gene3D - 196 307 - -
Acco10g1289 428 FunFam E2F transcription factor 1 118 191 - -
Acco10g1289 428 SUPERFAMILY E2F-DP heterodimerization region 201 306 IPR037241 -
Acco10g1289 428 PANTHER TRANSCRIPTION FACTOR E2F 84 400 IPR015633 GO:0000978|GO:0006357
Acco10g1289 428 Pfam E2F transcription factor CC-MB domain 205 304 IPR032198 GO:0046983
Acco10g1289 428 MobiDBLite consensus disorder prediction 96 121 - -
Acco10g1289 428 Coils Coil 219 239 - -
Acco10g1289 428 Pfam E2F/DP family winged-helix DNA-binding domain 126 189 IPR003316 GO:0005667|GO:0006355
Acco10g1289 428 SUPERFAMILY "Winged helix" DNA-binding domain 124 187 IPR036390 -
Acco10g1289 428 Gene3D - 120 191 IPR036388 -
Acco10g1289 428 SMART E2F_TDP_2 124 189 IPR003316 GO:0005667|GO:0006355
Acco10g1289 428 MobiDBLite consensus disorder prediction 86 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g1289 Acco-ChrAcco10 26794979 26798803 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g1289 12 395 E2F-DP Transcription Factor Family AT1G47870 45.521 9.37e-99 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Acco10g1289 E2F_CC-MB 5.3e-26 No_clan