Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g1250 ATGTGCAGTGGTTCCAAGAGGAAACCTTCTGAAGCAGGCTTCGTTATGGAGGGGGAATATGGGAAACAAGAGGGGCTGCTGCACAAGACTTCTGTGTTGCTTGAACTTGCAGCCTCAGATGATGTTGTGAGTTTCAAAGATGCAGTTGAACAAGAGGGTCTTGATGTTGATGAGGCATGCTTGTGGTATGGAAGGAGGGTTGGCTTAAAAAAATTGAGCTATGAAGAGAGGACTCCTCTCATGATTGCTTCTATGTTTGGAAGCAAGGGCGTGTTGAGTTATATACTCGGAACTGGTCATGTTGATGTTAACAGCGCTTGTGGATCAGATAGAGCTACTGCCCTTCATTGTGCTGTTGCTGGGGTTTCAGCCTCATCCCCTGAGGTTGTTAAGCTTTTGATTGATGCACGTGCAGATGTTAGTGCTGTTGATGCTTATGGTAACCAACCTTGTGACCTGATTGTATCCGGGATTAATTCAATATCCAGTTCAAGGAAGAGGATCCTACTAGCCATACTGAAAGGTAAGGATGTTAATGATGAGGAAAGTCTCTCATTTGTGGATACAGTTAGCCAGGTGGAGGAAAAGCAACAGCCAGATACGATTGCATCGCGTGTTTCAAAAGATGGGTCTGAGAAGAAAGATTATCCTATTGATCTTTCTCTTCCTGACATAAAGAGTGGGATTTATGGTACTGATGAGTTTAGGATGTATACATTCAAGGTAAAGCCTTGTTCAAGGGCTTATTCTCATGATTGGACTGAGTGCCCCTTTGTTCATCCAGGGGAAAATGCTAGGCGACGGGATCCTAGAAAATATCATTATAGCTGTGTCCCTTGCCCGGAGTTTCGGAAGGGATCATGCAGCAAGGGAGATGCCTGTGAGTATGCACATGGTATTTTTGAGTGCTGGCTTCATCCTGCCCAGTACCGGACACGGCTTTGCAAGGATGAGGGTGCTTGCAACAGAAGAGTTTGCTTTTTTGCTCATAAGCCTGAGGAGCTTCGCCCGTTGTATCCTTGCACCGGTTCAGCTATACCTTCTCCTAGATCTTTTTCATCTAGTTCCTCTTCATTGGATATGGGATCGCTTAGCCCTCTCTCACTGGGTTCTTCATCTGTCATGATACCTCCAGTCTCAACACCACCTCTGACTCCTACTGGTGCATCTTCTCCTGTTGGTGGAAACATGTGGCAGACCCAATCTAATGGAGTCCCTACCCTACAATTGCCAAGAAGCAGGCTAAAAACTGCTTCAAATGCTAGAGATGTTGGACTAGACCTTGAGTTACTTGGACTTGAAAATCACCGGCGCAGGCAGCAGATGATGATGGATGAGATTTCTGGTCTTTCCTCGCCATCAAGCTGGAAGAATTCCATGTCTGATAGTCATTCTTTTCCGGTCTCTTTCAGTGATCAAGCTGGAGAGCTTAATAGGCTTGCAGCAATGAAGCCTACCAACCTTGATGACATTTTCGGGTCAGTTGATCCATCAATTTTGCCTAAATTACAGGGAATTTCTCTAGACACTGCTGGATCTCAGTTGCAATCTCCAACCGGGTTCCAGGCACTTCAGAATGCAAACATGCATCTTCGAAGCTATTCTTCTGGACTATCCAATTCAAACGGGATGGGATCACCATCTTCTGTGAATGATCATCCATCTGTATCAGCAGCAACCACAATGGCCTTGAATGCAAGACTTGCTGCCTTTTCTAAGAGAAGCCAGAGCTTTATTGAGCGTAGCAGTGCAATAAACCGCCATCCAGAGCTTTCTTCTCCGGTTTCTTCAACAACAAAAGCTTCTGCCTTATCAAACTGGGGATCCCCTGATGGAAAGTTGGACTGGGGCATCCATGGAGAAGAGTTGAATAAGCTGAGGAAATCTGCTTCTTTCGGATTGCGAAGCAGTAGAAATACCCAAGTGCGAGAAAATCTCGATGAACCAGATGTTTCATGGGTTCATTCACTTGTAAAAGATGCTGCTCCGCCGGAATCTGGCCACTTTGGTGCTGAAGAACAGCAAAAGCAGCAGCTGCAATGCCATCATAACAATGGAACTGATGTAGTTCCAGCTTGGATGGAACAACTTAACATTGAGCAGGAGCAAATGGTAGCATGA 2121 0.455 MCSGSKRKPSEAGFVMEGEYGKQEGLLHKTSVLLELAASDDVVSFKDAVEQEGLDVDEACLWYGRRVGLKKLSYEERTPLMIASMFGSKGVLSYILGTGHVDVNSACGSDRATALHCAVAGVSASSPEVVKLLIDARADVSAVDAYGNQPCDLIVSGINSISSSRKRILLAILKGKDVNDEESLSFVDTVSQVEEKQQPDTIASRVSKDGSEKKDYPIDLSLPDIKSGIYGTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSKGDACEYAHGIFECWLHPAQYRTRLCKDEGACNRRVCFFAHKPEELRPLYPCTGSAIPSPRSFSSSSSSLDMGSLSPLSLGSSSVMIPPVSTPPLTPTGASSPVGGNMWQTQSNGVPTLQLPRSRLKTASNARDVGLDLELLGLENHRRRQQMMMDEISGLSSPSSWKNSMSDSHSFPVSFSDQAGELNRLAAMKPTNLDDIFGSVDPSILPKLQGISLDTAGSQLQSPTGFQALQNANMHLRSYSSGLSNSNGMGSPSSVNDHPSVSAATTMALNARLAAFSKRSQSFIERSSAINRHPELSSPVSSTTKASALSNWGSPDGKLDWGIHGEELNKLRKSASFGLRSSRNTQVRENLDEPDVSWVHSLVKDAAPPESGHFGAEEQQKQQLQCHHNNGTDVVPAWMEQLNIEQEQMVA 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g1250 706 PANTHER UNKEMPT FAMILY MEMBER 35 660 IPR045234 -
Acco10g1250 706 MobiDBLite consensus disorder prediction 378 403 - -
Acco10g1250 706 MobiDBLite consensus disorder prediction 535 554 - -
Acco10g1250 706 SMART c3hfinal6 309 332 IPR000571 GO:0046872
Acco10g1250 706 SMART c3hfinal6 274 300 IPR000571 GO:0046872
Acco10g1250 706 SMART ANK_2a 75 105 IPR002110 GO:0005515
Acco10g1250 706 SMART ANK_2a 110 142 IPR002110 GO:0005515
Acco10g1250 706 MobiDBLite consensus disorder prediction 386 403 - -
Acco10g1250 706 Gene3D - 275 337 - -
Acco10g1250 706 FunFam Zinc finger CCCH domain-containing protein 66 232 300 - -
Acco10g1250 706 ProSiteProfiles Ankyrin repeat profile. 110 145 IPR002110 GO:0005515
Acco10g1250 706 Pfam Ankyrin repeats (3 copies) 68 143 IPR002110 GO:0005515
Acco10g1250 706 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 279 299 IPR000571 GO:0046872
Acco10g1250 706 SUPERFAMILY Ankyrin repeat 54 155 IPR036770 -
Acco10g1250 706 Gene3D - 27 180 IPR036770 -
Acco10g1250 706 ProSiteProfiles Zinc finger C3H1-type profile. 279 301 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g1250 Acco-ChrAcco10 26407118 26409238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g1250 28 701 C2H2 Transcription Factor Family AT5G12850 39.860 1.07e-149 450
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Acco10g1250 Ank_2 4.1e-06 CL0465