Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g1224 ATGGAGGAGGAAGTTCAGGAGTTACAGGCCATGAATGAATCTCAACCGTTAGATGAAGCTCAAGATGGACGGCCATTGCTGATCCATATTAGGCTTATTATTGCTTATGAAACAAGAGCGAAGATGATGAGTATGATGGCTGAGAGAAACCCTCCCGCCATTTCAATGAAGGGACCATCTTCGTCTTCTTCAGGGCCTCCTCTGAGCGCCATAGACAGGTTCCTGTGGGGCCAACTGAGTCACTTGTCTTCTCTCTGGCCTAACAGCAGTGACGACGACATAGAAGCAAGTTTGATGGAAGGATTCATAGGAAATAATAATAATGTTAATGAAGTTCATCACATGATGATCCCTACAGCAGCACTGAATAAACAAGTTCAAGTAGGGAAGAGAATCAACAAGAAAAGCTCTTCTTCTTCCTCCTTGATCAAAGGACAGTGGACCGACGAAGAAGACAGGAAACTGGTGAAGCTGGTGAATGAATATGGAGTGAGGAAGTGGGCTCAAATAGCTGAGAATTTGGAGGGAAGAGCTGGGAAGCAGTGCAGGGAGAGATGGCATAATCATCTACGTCCTGATATTAAGAAGGACAGTTGGAGTGAGGAAGAAGAGAGAATATTGGTAGAAGCACATGCAAAAGTAGGGAACAGGTGGGCAGAGATTGCAAAGGGAATTCCAGGAAGAACAGAGAACTCTATCAAGAACCATTGGAATGCCACCAAAAGGAGACAGAACTCCAGGAGAAACCACAAATCTTCAAACAAAACCTCCACCAACAACAATGGAAGAAAGCCTCCTTCTTCCATTCTTCAAGATTACATCAAAAGCAAGACCCTCTCCAACAAAAACAACAACCCCACCATCGACGAAGATCCCTCTCATTATGAACCTGTGATGATGGCCGAAGCATTTGATGATGATGAGCTTCTCTTCATGCAACAGTTCTTCCCGGAGAATTATGATCAGAACCAGCAAATTCAGTCCACTTCGGACTTTTATCGAACAGACGTTGGGCATGAAGGTTATCTTCCTGAACAGAGTGTTGCTGCTGCTGCTATTGGTGGTCCCATGGTGAAACAAAGCCATCATCACCATTCTGATCTGTTTCTGGCTCAGTTATTGAATGGGGTTGGTTATAAACCGTCCATTTTCTGCTGTGATTATGGAAAAGATCAAAATTTGAACATGGGCCTGCCGGTAGGGGATGATCATCAGCAAGCTTGGAATGATGCAAAGAGAGAGATGGATCTGATGGAATTGGTTTCCTCTCAGCTTTCAACTACCACCGGCAATAGAATCTTCTAG 1305 0.4437 MEEEVQELQAMNESQPLDEAQDGRPLLIHIRLIIAYETRAKMMSMMAERNPPAISMKGPSSSSSGPPLSAIDRFLWGQLSHLSSLWPNSSDDDIEASLMEGFIGNNNNVNEVHHMMIPTAALNKQVQVGKRINKKSSSSSSLIKGQWTDEEDRKLVKLVNEYGVRKWAQIAENLEGRAGKQCRERWHNHLRPDIKKDSWSEEEERILVEAHAKVGNRWAEIAKGIPGRTENSIKNHWNATKRRQNSRRNHKSSNKTSTNNNGRKPPSSILQDYIKSKTLSNKNNNPTIDEDPSHYEPVMMAEAFDDDELLFMQQFFPENYDQNQQIQSTSDFYRTDVGHEGYLPEQSVAAAAIGGPMVKQSHHHHSDLFLAQLLNGVGYKPSIFCCDYGKDQNLNMGLPVGDDHQQAWNDAKREMDLMELVSSQLSTTTGNRIF 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g1224 434 CDD SANT 198 241 IPR001005 -
Acco10g1224 434 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 139 194 IPR017930 -
Acco10g1224 434 MobiDBLite consensus disorder prediction 1 20 - -
Acco10g1224 434 PANTHER MYB PROTEIN-RELATED 127 266 - -
Acco10g1224 434 MobiDBLite consensus disorder prediction 227 269 - -
Acco10g1224 434 Gene3D - 197 267 - -
Acco10g1224 434 FunFam Transcriptional activator Myb isoform A 143 196 - -
Acco10g1224 434 SUPERFAMILY Homeodomain-like 142 237 IPR009057 -
Acco10g1224 434 Gene3D - 143 195 - -
Acco10g1224 434 ProSiteProfiles Myb-like domain profile. 139 190 IPR001005 -
Acco10g1224 434 CDD SANT 147 190 IPR001005 -
Acco10g1224 434 ProSiteProfiles Myb-like domain profile. 191 241 IPR001005 -
Acco10g1224 434 MobiDBLite consensus disorder prediction 251 269 - -
Acco10g1224 434 MobiDBLite consensus disorder prediction 276 290 - -
Acco10g1224 434 MobiDBLite consensus disorder prediction 276 295 - -
Acco10g1224 434 ProSiteProfiles SANT domain profile. 194 245 IPR017884 -
Acco10g1224 434 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 195 245 IPR017930 -
Acco10g1224 434 Pfam Myb-like DNA-binding domain 147 204 - -
Acco10g1224 434 SMART sant 143 192 IPR001005 -
Acco10g1224 434 SMART sant 195 243 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g1224 Acco-ChrAcco10 26150326 26152668 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g1224 64 425 MYB Transcription Factor Family AT5G58850 39.905 8.05e-73 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco10g1224 Myb_DNA-bind_6 2.5e-19 CL0123