Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g1211 ATGAAGTGGGAAACATCGGGAATGTTCTCACCTGGAGAACACATCACCAATTCCAACACGAACTGGATTGTTGAAGATAATCGGAATCCGAGATGGACTTGCGCTGAGAACAAAATCTTCGAGAATGCTCTTGCGCTTTACGATCAGGATACACCAGATCGGTGGAAGAAAGTAGCTTCAATGATCCCAGGTAAGACGGCCGGCGATGTTCTGAGGCAGTACCAACAGCTTGAAGATGATGTTTATAACATCGAAGCTGGTCTGGTCTCAGTTCCGGACTATTATTACACCACAAATCCTTCTTCCTCATCTTTCACTTTGGACTGTTGGGCCAATTTTTCTTCTTCTGATTATGATCCCTGGAAGGAATTCCATAGAAAGAGAGCCTCTTCTACGAGACCAGCCTCTGAGAATGAAAGGAAGAAAGGAGTCCCTTGGACCGAAGAAGAACACAAACTGTTTCTTATGGGGCTGAAGAAGCATGGTAAAGGAGATTGGAGGAACATATCAAGGAACTTTGTGGTGACTCGAACACCGACTCAAGTAGCTAGCCATGCTCAGAAATACTTCATAAGGCAACTCTCCGCAGGAGGAGGGAAAGACAAGAGAAGAGCAAGCATCCATGACATAACCACAGTGAACCTTACTGAAACTTCAATCAGAACTTCACGAAACAAAATCAAGAAGTCTTCTTCTTGTTCTTCACCGCCAGAGAAACGCATGAACATGATGATGCCCTCATCACAGTCACACTCACCATCAGTACAGCAGAATAATTCTGCAGAAACACTGTTTCAGTGGACCCAACAACAACAAAAGCCAATGGATGCTCTGAGTGATCCTGTATTAGATGATAAACTGTTCATGTCTAAATTTTATGGGACTTGTGATGACTTATCATCCTATGGGAATGGAGATGAATCATCATCCTTTGATTTTAGAATTGAGGACCAGGATCTGTTCTCAAGTTCTCATCTCTATCAAGAATCTTCTTCCTACTTAGAACCTCTCAGTCAAAACATGGTTTTCCCGATGCCATGA 1041 0.4313 MKWETSGMFSPGEHITNSNTNWIVEDNRNPRWTCAENKIFENALALYDQDTPDRWKKVASMIPGKTAGDVLRQYQQLEDDVYNIEAGLVSVPDYYYTTNPSSSSFTLDCWANFSSSDYDPWKEFHRKRASSTRPASENERKKGVPWTEEEHKLFLMGLKKHGKGDWRNISRNFVVTRTPTQVASHAQKYFIRQLSAGGGKDKRRASIHDITTVNLTETSIRTSRNKIKKSSSCSSPPEKRMNMMMPSSQSHSPSVQQNNSAETLFQWTQQQQKPMDALSDPVLDDKLFMSKFYGTCDDLSSYGNGDESSSFDFRIEDQDLFSSSHLYQESSSYLEPLSQNMVFPMP 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g1211 346 CDD SANT 145 190 IPR001005 -
Acco10g1211 346 Pfam Myb-like DNA-binding domain 145 190 IPR001005 -
Acco10g1211 346 SUPERFAMILY Homeodomain-like 140 193 IPR009057 -
Acco10g1211 346 Gene3D - 24 91 - -
Acco10g1211 346 NCBIfam myb-like DNA-binding domain, SHAQKYF class 141 193 IPR006447 GO:0003677
Acco10g1211 346 SMART sant 28 80 IPR001005 -
Acco10g1211 346 SMART sant 142 192 IPR001005 -
Acco10g1211 346 ProSiteProfiles SANT domain profile. 146 194 IPR017884 -
Acco10g1211 346 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 26 270 IPR043363 -
Acco10g1211 346 SUPERFAMILY Homeodomain-like 30 86 IPR009057 -
Acco10g1211 346 MobiDBLite consensus disorder prediction 222 259 - -
Acco10g1211 346 Gene3D - 144 194 - -
Acco10g1211 346 ProSiteProfiles Myb-like domain profile. 138 190 IPR001005 -
Acco10g1211 346 FunFam transcription factor MYB1R1 144 195 - -
Acco10g1211 346 CDD SANT 31 77 IPR001005 -
Acco10g1211 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 138 194 IPR017930 -
Acco10g1211 346 FunFam Transcription factor SRM1 20 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g1211 Acco-ChrAcco10 26046579 26047807 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco10g1211 Myb_DNA-binding 5.8e-13 CL0123