Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g1168 ATGACCCAAGCGGTGGCTGGGGCAAATGCATCGAATTCATCCTCACTGGAATGCCCTAACGCTGATTCTGAATCAAATGATGGTCAATCTTTGTCTAATAGTGGGTTGAATGAGGAAGATGATGATGCCTCTAAAGAATCACCAGCTGCAGCTCGCAATCAAGCAGGAAATTACGTTCAAGATCACCAAGGGATGCAGCATGCTTCATCATCTGCACCATCCATGCGAGATGAATGCTTTACACAGGCTCCACAGCTCGAACTTGTTGGTCATTCAATAGCATGTGCTTCACATCCTTATCCGGATCCATATTATGCGGGACTGATGGCGGCTTATGGTTCCCACCAGCTGGGATATCCTCCTTTGATGGGAATGCCACAGGCCAGAATGCCTTTGCCCCTTGAGATGGCACAAGAACCTGTTTACGTAAATGCGAAACAATACCCAGCAATTATTAGGCGTAGACAGGCTCGTGCGAAGGCAGAGCTTGAAAGGAAGCTAATAAAAGTTAGAAAGCCATACCTTCATGAATCTCGGCATCAGCATGCAATGAGGAGGGCAAGAGGTACCGGAGGTCGCTTTGCAAAGAAAAATGATGTTGCTGAGGACTCTGGCAAAGAAAAGGACGTGGGATCTGGTCCATTGGGATCTTCACAATCAGTTAGTTCATCTGGTTCTGAACCTTTACCCTGTGAGTCTGCTGAAACCTGGAACTCTCCTAATGTGCAACAAGATGCCAGAGGATATAAACTTCCTGACCATTATGAAGCACACAACTATGCAAACAATAGTGGCCCTTATAATAATAATCATAGTGGCTTGCAATCTTCCACCTACCATTTGCACTCAGGTGAAAGAATCGAGGAAGAGGACTGTTCAGTACAACAGCGGGGGAGTATCTCTTCTGAACACACAACACAGAGGCGTCTTGCGATTCAGTAA 942 0.4618 MTQAVAGANASNSSSLECPNADSESNDGQSLSNSGLNEEDDDASKESPAAARNQAGNYVQDHQGMQHASSSAPSMRDECFTQAPQLELVGHSIACASHPYPDPYYAGLMAAYGSHQLGYPPLMGMPQARMPLPLEMAQEPVYVNAKQYPAIIRRRQARAKAELERKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNDVAEDSGKEKDVGSGPLGSSQSVSSSGSEPLPCESAETWNSPNVQQDARGYKLPDHYEAHNYANNSGPYNNNHSGLQSSTYHLHSGERIEEEDCSVQQRGSISSEHTTQRRLAIQ 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g1168 313 MobiDBLite consensus disorder prediction 1 37 - -
Acco10g1168 313 PRINTS CCAAT-binding transcription factor subunit B signature 140 162 IPR001289 GO:0003700|GO:0006355
Acco10g1168 313 PRINTS CCAAT-binding transcription factor subunit B signature 171 194 IPR001289 GO:0003700|GO:0006355
Acco10g1168 313 MobiDBLite consensus disorder prediction 50 77 - -
Acco10g1168 313 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 139 194 IPR001289 GO:0003700|GO:0006355
Acco10g1168 313 MobiDBLite consensus disorder prediction 294 313 - -
Acco10g1168 313 MobiDBLite consensus disorder prediction 174 191 - -
Acco10g1168 313 ProSitePatterns NF-YA/HAP2 subunit signature. 142 162 IPR018362 GO:0003677|GO:0016602
Acco10g1168 313 Gene3D - 137 199 - -
Acco10g1168 313 ProSiteProfiles NF-YA/HAP2 family profile. 137 197 IPR001289 GO:0003700|GO:0006355
Acco10g1168 313 SMART cbf3 136 197 IPR001289 GO:0003700|GO:0006355
Acco10g1168 313 MobiDBLite consensus disorder prediction 1 77 - -
Acco10g1168 313 MobiDBLite consensus disorder prediction 192 209 - -
Acco10g1168 313 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 18 248 IPR001289 GO:0003700|GO:0006355
Acco10g1168 313 MobiDBLite consensus disorder prediction 174 313 - -
Acco10g1168 313 MobiDBLite consensus disorder prediction 213 245 - -
Acco10g1168 313 MobiDBLite consensus disorder prediction 261 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g1168 Acco-ChrAcco10 25553822 25556812 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g1168 11 239 CCAAT-HAP2 Transcription Factor Family AT5G12840 56.170 5.33e-74 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Acco10g1168 CBFB_NFYA 7.5e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco10g1168 10 25553822 25556812 Acco10g1168 10 25553822 25556812 ECH