Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g1160 ATGGTTTGGCTTTTGATTCTTCATAGGAAGATACAAGAGGAAGAACAAATTGTCAAATTGATGATTCACCCAAACCAAAACGAAAAGGTATCAGAACCGAAAATTTGCTTCAAGGACGATGATAAGATAGGGACACGTGAAGGAATACCTATAGCTTCATGTGAGAGAGAGAAAGAGAGAGAGAGACTAAGAGTAGAGAGAGATATGGGTCGTATTCCATGCTGTGAGAAGGACAACGTTAAAAGAGGACAGTGGACACCTGAGGAAGACAACAAGCTCTCCTGCTACATTGCCCAAAATGGTACCAGGAATTGGCGCCTCATTCCTAAGAATGCTGGCCTCCAGAGGTGTGGTAAGAGCTGCAGGCTAAGGTGGACTAACTACCTTCGTCCTGATCTCAAGCATGGTCAGTTTTCTGACGCTGAAGAGCAAACCATTGTCAAGCTTCACTCCGTTTTCGGGAACAGATGGTCACTAATAGCAGCCCAGTTGCCGGGCCGCACTGACAATGACGTCAAAAACCACTGGAACACCAAGCTGAAAAAGAAGCTTTCAGGAATGGGGATTGACCCTGTCACCCACAAGCCATTCTCCCACCTGATGGCTGAAATTGCAACAACATTGGCACCCCCACAGGCAGCTCACCTAGCTGAAGCAGCTCTGGGCTGCTTCAAAGATGAGGTGCTTCATCTTCTTACCAAAAAGAAGATTAACTTCCAGGCTCAACACAACACTGATCAAATGGGGAATAACGACGTTACCTCTTTCATGAACTATAAACCTGATGAGAAGGAAGACGCTACTGAGAAGATTAAGTTTGGGTTATCCAAGGCTATGCAAGAACCTGAAATGACCTCAAATAATAAACCTTGGGACTGCACTGCAGCGACAGCTGCTAGTTTTGAGGGGACTTGCAGTGTCTTCCCTACAGTGACTGGGTTTCAATTTAGTCCCGTGTCGTTTGCCAACGAAGGAGATGGATCACCATGGAGCCAAAGTGTGTGCACCGGAAGTACATGCACGGCCTTGGATCAACAGGGCCAGTTACAGGAAAAACTTCAGGAAGAAAATGGAGATGATTCTAACATTGCAAAGGAAATCAGAAGTGGATCCAATTTATTCAATGCGCAGTGTGTTTTGTGGGATTTACCATCTGAAGATCTAATCAATCCCATGGTATAA 1182 0.4535 MVWLLILHRKIQEEEQIVKLMIHPNQNEKVSEPKICFKDDDKIGTREGIPIASCEREKERERLRVERDMGRIPCCEKDNVKRGQWTPEEDNKLSCYIAQNGTRNWRLIPKNAGLQRCGKSCRLRWTNYLRPDLKHGQFSDAEEQTIVKLHSVFGNRWSLIAAQLPGRTDNDVKNHWNTKLKKKLSGMGIDPVTHKPFSHLMAEIATTLAPPQAAHLAEAALGCFKDEVLHLLTKKKINFQAQHNTDQMGNNDVTSFMNYKPDEKEDATEKIKFGLSKAMQEPEMTSNNKPWDCTAATAASFEGTCSVFPTVTGFQFSPVSFANEGDGSPWSQSVCTGSTCTALDQQGQLQEKLQEENGDDSNIAKEIRSGSNLFNAQCVLWDLPSEDLINPMV 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g1160 393 ProSiteProfiles Myb-like domain profile. 130 180 IPR001005 -
Acco10g1160 393 Pfam Myb-like DNA-binding domain 82 129 IPR001005 -
Acco10g1160 393 Pfam Myb-like DNA-binding domain 136 178 IPR001005 -
Acco10g1160 393 ProSiteProfiles Myb-like domain profile. 77 129 IPR001005 -
Acco10g1160 393 Gene3D - 82 134 - -
Acco10g1160 393 CDD SANT 138 180 IPR001005 -
Acco10g1160 393 CDD SANT 85 129 IPR001005 -
Acco10g1160 393 Gene3D - 137 196 - -
Acco10g1160 393 FunFam transcription factor MYB80 137 197 - -
Acco10g1160 393 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 133 IPR017930 -
Acco10g1160 393 SUPERFAMILY Homeodomain-like 79 176 IPR009057 -
Acco10g1160 393 PANTHER F14D16.11-RELATED 69 389 - -
Acco10g1160 393 FunFam Transcription factor RAX3 75 135 - -
Acco10g1160 393 SMART sant 134 182 IPR001005 -
Acco10g1160 393 SMART sant 81 131 IPR001005 -
Acco10g1160 393 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 134 184 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g1160 Acco-ChrAcco10 25497506 25500563 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g1160 69 393 MYB Transcription Factor Family AT5G56110 56.325 6.96e-118 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco10g1160 Myb_DNA-binding 1.4e-14 CL0123