Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g1147 ATGAGGATCACTGTAATGACAGCTGATGAACAAATACTTACGTTGGATGTTGATCCCCATGAATCTGTGGAAAACGTCAAAGCATTGCTTGAGGTAGAGACACAAGTGCCTCTTCAGCAACAGCAACTTCTCTTTAACGGAAGGGAGATGAGTAATTCTGAGAAATTGAGTGCTATCGGTGTTAAAGATGAAGATTTGGTGATGATGGTCTCTGCTGCTCCTTCTGGTGCACCTGTAAATGCACCTGCCAATGATTTAGGCTTCAATCCTGATGGATCTGCTGTAAATCCTACTGCTTTCCAGCAGCAGATTAGACAGGATTCTAACCTGATCGGTCAACTCTTTCAGACCGATCCAGAGTTGGCACAAGCTATCTTAGGAAATGATCTCAACAAAATACAGGAGCTTTTACGCGTGCGTCATCAACAGAGATCTGAATTACAACGACAAAAAGAGGAGGAACTTGCTCTTCTTTATGCAGATCCTTTTGATGTTGAAGCACAAAAGAAGATTGAAGCTGCCATTCGTCAGAAAGGAATTGATGAAAACTGGGCAGCTGCACTAGAATATAATCCCGAAGGTTTTGCAAGAGTGGTTATGTTGTATGTTGACATGGAGGTTAATGGTGTCCCACTGAAGGCATTTGTTGACAGTGGAGCCCAGTCCACAATCATATCGAAAAGCTGTGCTGAGCGCTGTGGATTGTTAAGACTTCTGGATCAGCGTTACAAGGGAATTGCTCATGGAGTTGGCCAATCAGAGATATTAGGACGAATACACGTAGCTCCAATCAAGATTGGGAATATATTCTACCCTTGCTCATTCTTAGTGCTTGATGCTCCTAACATGGAATTCCTTTTCGGGCTGGATATGCTCCGAAAGCACCAGTGTAGCATAGATTTAAAAGAGAATGTTTTGCGAGTTGGTGGAGGAGAAGTTTCTGTGCCATTTTTGCAAGAAAAAGACATACCATCTCGGTTTCTGGATGAAGAAAGGTACGCTAAGGAAGCATCGAGCTCAGGTTCACTGGCAACAGGAACGGCAGATAGGAGTGGTAGTGTACCAAAAGGAGGCCAGTCTTCCGGAGGAGCTTCTGGTGGCACTTCTCAGGAGAGTGAGTTTGAAGCAAAAGTTGCAAAGCTGGTGGAGTTAGGGTTTGGAAGAGAAGCAGTGGTACAAGCTCTTAAGTTGTTCAATGGCAATGAGGAACAGGCTGCTGGGTTTCTGTTTGGTGGTTTCTAG 1242 0.442 MRITVMTADEQILTLDVDPHESVENVKALLEVETQVPLQQQQLLFNGREMSNSEKLSAIGVKDEDLVMMVSAAPSGAPVNAPANDLGFNPDGSAVNPTAFQQQIRQDSNLIGQLFQTDPELAQAILGNDLNKIQELLRVRHQQRSELQRQKEEELALLYADPFDVEAQKKIEAAIRQKGIDENWAAALEYNPEGFARVVMLYVDMEVNGVPLKAFVDSGAQSTIISKSCAERCGLLRLLDQRYKGIAHGVGQSEILGRIHVAPIKIGNIFYPCSFLVLDAPNMEFLFGLDMLRKHQCSIDLKENVLRVGGGEVSVPFLQEKDIPSRFLDEERYAKEASSSGSLATGTADRSGSVPKGGQSSGGASGGTSQESEFEAKVAKLVELGFGREAVVQALKLFNGNEEQAAGFLFGGF 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g1147 413 Coils Coil 133 153 - -
Acco10g1147 413 MobiDBLite consensus disorder prediction 338 371 - -
Acco10g1147 413 Gene3D Acid Proteases 179 325 IPR021109 -
Acco10g1147 413 Pfam Ubiquitin family 3 70 IPR000626 GO:0005515
Acco10g1147 413 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 369 412 IPR015940 -
Acco10g1147 413 CDD UBA_scDdi1_like 375 410 - -
Acco10g1147 413 FunFam DNA damage inducible 1 homolog 2 178 325 - -
Acco10g1147 413 SUPERFAMILY Acid proteases 186 301 IPR021109 -
Acco10g1147 413 Gene3D - 347 412 - -
Acco10g1147 413 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Acco10g1147 413 CDD RP_DDI 185 308 IPR019103 GO:0004190|GO:0006508
Acco10g1147 413 Pfam Aspartyl protease 178 300 IPR019103 GO:0004190|GO:0006508
Acco10g1147 413 SUPERFAMILY Ubiquitin-like 1 82 IPR029071 -
Acco10g1147 413 CDD Ubl_Ddi1_like 1 70 IPR033882 -
Acco10g1147 413 SMART uba_6 374 411 IPR015940 -
Acco10g1147 413 PANTHER ASPARTYL PROTEASE DDI-RELATED 1 409 - -
Acco10g1147 413 SMART ubq_7 1 72 IPR000626 GO:0005515
Acco10g1147 413 SUPERFAMILY UBA-like 362 412 IPR009060 GO:0005515
Acco10g1147 413 Gene3D - 1 84 - -
Acco10g1147 413 Pfam UBA/TS-N domain 375 408 IPR015940 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g1147 1 70 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 28.571 1.34e-06 45.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco10g1147 10 25404456 25410572 Acco10g1147 10 25404456 25410572 ECH