LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco10g1039	ATGGACGCCGCTATCAACTCCTCGGAGGTGGCTCGCTCCGGTTCGGAGCTCCGGCTCTGTCAGGTCTCTTCCTCCGATCCGACTCAATTCGTCGTTTCCCGAAGTGCAAGGTACAAGCTCATGTCCCCTGCTAGTCTTCCGATCTCCAGGTCGCCCTGTATCACGATTCCTCCTGGCCTCAGTCCCTCCTCGTTTCTTGAGTCCCCGGTGCTTCTCTCCAACGTCAAGGTGGAGCCTTCACCAACTACTGGGTCCCTTACTAATCCTATGTCTGTCCAAGAATCTATTTCTTCTTCAACATATCCTGTAACCACTGTACGCTTCAAAACCAATACCGTTGATGACAAAATATCTGGCTTCTTTGAGTTTAACTCAAACAATAGATGGAATATGGCTCCCACAGATTTCAACAGCCGTGTAAATGAACCATCTGTGCAGATACAAGGTTCAAGCCAAGCTCAGTCTTCTGCTTCATCACCATTAGTGAAAAGTGAGATTGAAATGCCCTCAAATGAATTAAGTTTATCATCACCTGTTCAAATGGTTTGTTCAGGGGCTAGTGCTCCTGTTCAAGCTGATATGGATGGGTCTAATCCCGGAGGCGATGTAGCTAATGTGCTTCAAGCTTCACAATTTGAAGTTATAGGCAGTGGTGTCTCAGTTGCTACCGAGAGAACATCTGATGATGGATATAATTGGCGGAAATATGGACAGAAGCATGTTAAAGGGAGTGAATTTCCACGCTGCTATTACAAATGTACCCATCCTAACTGTGAAGTGAAAAAACTGTTTGAACGCTCTCAATGTGGGCAAATCACTGAGATAATTTACAAGGGATCACATGATCATCCTAAACCTCAACCAAGTCGCCGATACTCTTCTGGTACTGCCATGTCTATGCATGAGGAGAGATTTGAGAAGCCTTCACCTCTGTCTGGCCAAGATGCAAATGATGATGGTCGGGAGGGTGCAGGATCAGCTTCCAACAGGATCAATGATGAGGTTGATGATGACGACCCCTTCACTAAGCGAAGGAAGGTGGAGAATGGAAATGCTGACATCACTCCTATAGTTAAGCCTATTCGAGAACCAAGGGTTGTTGTACAAACTCTAAGTGAAGTTGACATATTGGATGATGGGTATCGCTGGCGAAAGTATGGGCAGAAGGTGGTGAGAGGCAATCCCAACCCTAGGAGCTACTACAAATGCACAAATGCTGGTTGCCCTGTTAGGAAACACGTTGAGAGAGCTTCTCATGATCCCAAAGCAGTAATAACCACGTATGAGGGTAAGCACAATCATGATGTCCCTACTGCAAGGAGTAGTAGCCATGATACAGCAGGACCAGCAGCTCTAGTTGGACAGACACAAATAAGATTGGAAGAAAGTGATACCATTAGTCTCGACCTTGGGATGGGTATCAGCTCAGCTGCTGAACATAAATTGAAGGGGCAAGGGCAAATGCTACCATCTGAATTTGGGAATGGTCAAACTCATGCCAACTGTTCCAATTTCAAGTTTGTTCATAATGCCCCAGCTCCAGCATACTTTGGTGTTTTAAATAATGGCTCAAATCCATTTGCTTCTTCTAGAGAACCCCCATCTTTGAACCATACCACTTATCATTGCCAGCAGCCACAGGGCATGGGAAGAATACTAACAGGTCCATGA	1671	0.4578	MDAAINSSEVARSGSELRLCQVSSSDPTQFVVSRSARYKLMSPASLPISRSPCITIPPGLSPSSFLESPVLLSNVKVEPSPTTGSLTNPMSVQESISSSTYPVTTVRFKTNTVDDKISGFFEFNSNNRWNMAPTDFNSRVNEPSVQIQGSSQAQSSASSPLVKSEIEMPSNELSLSSPVQMVCSGASAPVQADMDGSNPGGDVANVLQASQFEVIGSGVSVATERTSDDGYNWRKYGQKHVKGSEFPRCYYKCTHPNCEVKKLFERSQCGQITEIIYKGSHDHPKPQPSRRYSSGTAMSMHEERFEKPSPLSGQDANDDGREGAGSASNRINDEVDDDDPFTKRRKVENGNADITPIVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARSSSHDTAGPAALVGQTQIRLEESDTISLDLGMGISSAAEHKLKGQGQMLPSEFGNGQTHANCSNFKFVHNAPAPAYFGVLNNGSNPFASSREPPSLNHTTYHCQQPQGMGRILTGP	556

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco10g1039	556	FunFam	WRKY transcription factor	217	287	-	-
	Acco10g1039	556	Gene3D	WRKY domain	217	287	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Acco10g1039	556	Gene3D	WRKY domain	362	438	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Acco10g1039	556	FunFam	WRKY transcription factor 33	364	430	-	-
	Acco10g1039	556	ProSiteProfiles	WRKY domain profile.	372	437	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Acco10g1039	556	ProSiteProfiles	WRKY domain profile.	222	286	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Acco10g1039	556	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	67	464	IPR044810	GO:0003700
	Acco10g1039	556	SUPERFAMILY	WRKY DNA-binding domain	369	437	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Acco10g1039	556	SMART	WRKY_cls	377	436	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Acco10g1039	556	SMART	WRKY_cls	227	285	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Acco10g1039	556	MobiDBLite	consensus disorder prediction	331	348	-	-
	Acco10g1039	556	SUPERFAMILY	WRKY DNA-binding domain	223	286	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Acco10g1039	556	Pfam	WRKY DNA -binding domain	228	284	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Acco10g1039	556	Pfam	WRKY DNA -binding domain	378	434	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Acco10g1039	556	MobiDBLite	consensus disorder prediction	278	348	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco10g1039	Acco-ChrAcco10	24246430	24250631	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco10g1039	41	556	WRKY Transcription Factor Family	AT4G26640	53.818	3.87e-173	498

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Acco10g1039		WRKY	1.4e-25	CL0274