Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g1034 ATGAGAGATCGCACGACAGGTCGTGCTCGTGGTTTTGGTTTCATCGTGTTTGCTGATCCTGCTGTTGCAGAAAGAGTCATTATGGATAAGCACATAATTGATGGCCGCACAGTTGAAGCAAAGAAAGCCGTTCCCAGGGATGATCAGCAGATGATAAATAGAACTTCCGGTAGTGTCCATGGCTCTCCTGGTCCTGGGCGTACAAAAAAGATTTTTGTTGGAGGTCTGCCTTCAAGCATAACTGAGAGTGAATTTAAGAAGTATTTTGATCAGTTTGGTACAATCAACGATGTTGTAGTAATGTATGATCACAATACTCAGAGGCCAAGAGGCTTTGGCTTCATCACTTATGATTCAGAAGATGCTGTGGACAGAGTTCTTTATAAAACATTCCACGAACTCAATGGAAAAATGGTTGAGGTCAAGAGGGCAGTTCCAAAAGAGCTTTCCCCCGGATCCAGCCGAAGCCCGTTGTTAGGGACAAATTTTGGTTTCAATAGGGCCAGCAGCTACCTGAACAGTTATGCACAGGGTTATAACATGAGTCCAGTTGGAGGCTATGGGGTGAGGATGGATGGTAGGTTCAGTCCTCTCACAAGTGGCAGAAGTGGAATTTCCCCCTTTGGCACCAGTGGTTATGGAATGGGACTGAATCTGGATGCAGGACTGGGTGCAGGATATGGTGGGACTTCCAATTATGGAAGCAATCTCGGATATGGCCGGATGATTACTCCTTTTTACAGTGGCAACTCAAGCAGATACACCACTCCTATAGGCTACAATGCTGGAAATGGGAGAAGCAATTCTCTAATGAACTCATCTTCTCGGAATGTCTGGGGAAGTGGTGGCCTAAGTAATGCCAATAACCAAGTCAGTGCTGGTACTGGTGCTGGTTTGGGATCTGGAAGTGGTGCTTTTGGCGTTTCAGTTAAAAATACTGGTGCAAATTGGGGTCAGTCCTTTCCGGTTCAGGGTGGAGCGGCTGCTTCGGGCTATACCACTGGGATTAATGTTTATGAAGGTGGAGATAATAGTTTTGGGTTAGGAGGTACAGTGTATGGAAGAAATGGTAGTGTAGGTGTAAATTCATCTTCTGCATTTTCTGCTTCAGCTGGTGGTTATGAAGGATCCTATGGGGATTTATACCATAATGGTTCAGTTTATGACGACTCGACTTGGAGGTCATCTGTTTCTGACCTTGATGGTTCTGGTTCATTTGATTATGGACTTGGTGGTTTAGCCTCTGAGGATCCAGTAAAGACTTCAGAAGGTTATATTGGAAACTACAATGTTTCAAGCAGACAACCTAACAGAGGAATTGCTACTTAG 1329 0.4477 MRDRTTGRARGFGFIVFADPAVAERVIMDKHIIDGRTVEAKKAVPRDDQQMINRTSGSVHGSPGPGRTKKIFVGGLPSSITESEFKKYFDQFGTINDVVVMYDHNTQRPRGFGFITYDSEDAVDRVLYKTFHELNGKMVEVKRAVPKELSPGSSRSPLLGTNFGFNRASSYLNSYAQGYNMSPVGGYGVRMDGRFSPLTSGRSGISPFGTSGYGMGLNLDAGLGAGYGGTSNYGSNLGYGRMITPFYSGNSSRYTTPIGYNAGNGRSNSLMNSSSRNVWGSGGLSNANNQVSAGTGAGLGSGSGAFGVSVKNTGANWGQSFPVQGGAAASGYTTGINVYEGGDNSFGLGGTVYGRNGSVGVNSSSAFSASAGGYEGSYGDLYHNGSVYDDSTWRSSVSDLDGSGSFDYGLGGLASEDPVKTSEGYIGNYNVSSRQPNRGIAT 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g1034 442 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 438 - -
Acco10g1034 442 SUPERFAMILY RNA-binding domain, RBD 68 234 IPR035979 GO:0003676
Acco10g1034 442 FunFam Heterogeneous nuclear ribonucleoprotein 1 66 153 - -
Acco10g1034 442 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 45 IPR000504 GO:0003723
Acco10g1034 442 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 129 IPR000504 GO:0003723
Acco10g1034 442 SUPERFAMILY RNA-binding domain, RBD 1 67 IPR035979 GO:0003676
Acco10g1034 442 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 146 IPR000504 GO:0003723
Acco10g1034 442 CDD RRM2_Hrp1p 70 147 - -
Acco10g1034 442 SMART rrm1_1 70 142 IPR000504 GO:0003723
Acco10g1034 442 Gene3D - 66 154 IPR012677 -
Acco10g1034 442 Gene3D - 1 51 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g1034 Acco-ChrAcco10 24189412 24191784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g1034 9 170 Eukaryotic Initiation Factors Gene Family AT2G36660 29.885 3.78e-09 57.0