Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g1004 ATGGAATTGGCGACGGTTGCTGAGGGAATGGAACCGCCGGAGGAGGCCCGATCTGAGGGCTTTCCGGTGAAAAGGCCGATTGAGAATGGTGGGGGAGAGGAAATGGCCAAGAAGCCTAAGGTTGAAGCAGCTGATGCTGCTGCGTCTAGCGGGGAGTTGAAGAGAGTGGCGGAGATTGTGCTGGTTTTGTCGACAATGGCGGCAATGCGAGGTGGGAAGAAGCCCACTAACGTGGAGATTGAGTTGATGAAGGAAGCAAGGATGAAGTTGGTGGAGTTGTGTCAAGGGATGGCTCCCAAGGATATTGTGGCGAGGGAAGCTGTGGGGACTGTGATTGAGGATCTTGGATTGAACGGGAAGATTAAAGATCAGAGATTAGGGTTTCAAACTCCTAAGATGTCTATAACCGAAAGGTTCTCACTCTCCAAGTTGAAGATGGAAGAGTCAAAGAAACTTCCTGAACATTCTGCTCCATCAACTTCTCAGCCATTGCAAACTAGCTTGGGTGGTGGAATGGTTGAAAACCGTATTCCATCTCATACTGTTCGAATGTATCCTTTGGACAAATCAAGCCACTCAGGACTCTCTTCTTCTGGTAACATAGCTTCTCCCGTGACTCATGTTTCTGCTGGATCTTCTGCTCCTTTGCAATATCAATCAACTTCTGGTGAAGTAAAACCACCTATAGTTTCTGGTGGAATGCCTAGCAGTCACTTGGGTAGAACTTCATCTTCAGTAGCATTGCCTAAAGTTGAACAACCACAGTTCAGAGTTGATGTAGGATCAAGTGGACCTTATTTGCTGCATGCTCAAGCAAACTCTTCATCAAACCAACCCTTGGTGAATGCTCCAACATGGTCAATACAAACTCAAACTCAATCTGCCTCATTCGCTAGAAGTACACAAGAAAACAAAGTAACTGGACATAACCCTGTCAAGGTTGATGGAATGGGTGACCTAACTGGGCCAAGAGCTGCTTCACAAATAGCAAGGGATCAGAGCTATAGACCATCAGTAACTCAAACAGCACCTGGAAATTTGTCTAGCTTTCACCAACCATTACAGGGCATGAACATTATTCAGCCTCCTTCACTTCCTAATAATCACGTTGAAATTGCAAAGATTGTCCAGAAACTATTACAGCCAAAGCTTCCAGAGCATCCCACATGGACTCCTCCATCAAGGGATTATATGAACAAGGCATTTACTTGCCAGATGTGTGATCTTACAGTCAATGAAGTGGATACTGTGCTTCTTTGTGATGCTTGTGAAAAAGGGTTTCACTTGAAGTGTTTGCAGCCATCACTTTTGAGAGGAATTCCTAGAGGTGAGTGGCACTGCATGAGGTGCTTGACATTAAGTGGTGGAAAGCCTTTGCCTCCAAAATATGGTCGTGTCATGAGGTCTGCGAACACTCCGCCGAAACTGCCCTCTAGCACAGGTGGGGTCCAACCATCCTCAGAGAAGAAAACTGGAGTTGCAGCTCTGAAGGTTTCACATGAGTTGACAACAAATGGAGGCTCTGTTTTGACTGGTGCTGCTAGTAGCAATAAGAATGCTGAGCTTGCATCTGTCTCAAAGGTCCCTGATACAAAAGAAATGCAAGATAACACTCATTCGTCCAGCAGCAAACACATGGATGAGAAGCCTGACCCAAATATCTCAATAATATCCCTTAGTGCAGCTTCTAGTCCTTCTGTTGGCTTGCCAGGTGAGAGTTCTTCTGAACAAATAATTTCTGAGCCATCTGCCTCTAAAGAGAGAACCTTTGCTTCAGAACCAGAAGTACTTCCTCAATTAAATGAGTCAGTTAAACCTAACAACTTGCAATTGTCAAAAAATGTACAAGTTGAACTGACGCCACTGTCAAATAATGCTGAAGTTTCATTATATAAACATGGTGACAATAGTTTGACAGATGATAACAGAAAGGAATCTCATGGGGGAGAAAGTTTGATATATGATATCAAACGTGATGACCCATTTGTTGCACTAGCAAATTCTGATAAAAGTTCTGGAACACATGCTGAAGGTAAACAATGCACTGCATTATATTCAGATGGCTTACATGCAGTAGAATGGGTTGGTGATCTTGTACAACTTCTTGATGAGAAAATGTTTTACCAATCTTGCCGAGTTAATGGAGTTACATATAGGCTGCAAGATCATGCTCTTTTTAAATCCAGTCATGGCAAGTTATTTCCATCGAAACTGCAGTCAATGTTTGAAGATAGCAAAACTGGATTGAAGTGGGTAAATGTGACAACGTGCTACTTTCCTCGTGATTTACCAGGGAATATCCCTCATCCATGTTCTGAAGTCAATGAGGTTTATGAATCTAATAGTGATAGAACTGAAATGGCTGGCTCCATTCAAGGTCCCTGTGAAGTCCTCCCGTCTGATAAATGTCAACAAGAAAACAATAGACGAAGAGGGTTAGAACCTGAGGAAAGTGCTAGTCTTCGGCCACTTTTCCTGTGCAGATGGTTCTATGATGGAGTCAAAAAATTATTTCAGCCTGTTACCTGTTGA 2532 0.4348 MELATVAEGMEPPEEARSEGFPVKRPIENGGGEEMAKKPKVEAADAAASSGELKRVAEIVLVLSTMAAMRGGKKPTNVEIELMKEARMKLVELCQGMAPKDIVAREAVGTVIEDLGLNGKIKDQRLGFQTPKMSITERFSLSKLKMEESKKLPEHSAPSTSQPLQTSLGGGMVENRIPSHTVRMYPLDKSSHSGLSSSGNIASPVTHVSAGSSAPLQYQSTSGEVKPPIVSGGMPSSHLGRTSSSVALPKVEQPQFRVDVGSSGPYLLHAQANSSSNQPLVNAPTWSIQTQTQSASFARSTQENKVTGHNPVKVDGMGDLTGPRAASQIARDQSYRPSVTQTAPGNLSSFHQPLQGMNIIQPPSLPNNHVEIAKIVQKLLQPKLPEHPTWTPPSRDYMNKAFTCQMCDLTVNEVDTVLLCDACEKGFHLKCLQPSLLRGIPRGEWHCMRCLTLSGGKPLPPKYGRVMRSANTPPKLPSSTGGVQPSSEKKTGVAALKVSHELTTNGGSVLTGAASSNKNAELASVSKVPDTKEMQDNTHSSSSKHMDEKPDPNISIISLSAASSPSVGLPGESSSEQIISEPSASKERTFASEPEVLPQLNESVKPNNLQLSKNVQVELTPLSNNAEVSLYKHGDNSLTDDNRKESHGGESLIYDIKRDDPFVALANSDKSSGTHAEGKQCTALYSDGLHAVEWVGDLVQLLDEKMFYQSCRVNGVTYRLQDHALFKSSHGKLFPSKLQSMFEDSKTGLKWVNVTTCYFPRDLPGNIPHPCSEVNEVYESNSDRTEMAGSIQGPCEVLPSDKCQQENNRRRGLEPEESASLRPLFLCRWFYDGVKKLFQPVTC 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g1004 843 MobiDBLite consensus disorder prediction 468 492 - -
Acco10g1004 843 CDD BAH 715 842 - -
Acco10g1004 843 MobiDBLite consensus disorder prediction 532 551 - -
Acco10g1004 843 MobiDBLite consensus disorder prediction 147 171 - -
Acco10g1004 843 MobiDBLite consensus disorder prediction 556 587 - -
Acco10g1004 843 ProSitePatterns Zinc finger PHD-type signature. 404 450 IPR019786 -
Acco10g1004 843 MobiDBLite consensus disorder prediction 1 39 - -
Acco10g1004 843 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 364 457 IPR013083 -
Acco10g1004 843 ProSiteProfiles Zinc finger PHD-type profile. 401 453 IPR019787 -
Acco10g1004 843 Gene3D - 695 842 IPR043151 -
Acco10g1004 843 SMART PHD_3 403 451 IPR001965 -
Acco10g1004 843 SUPERFAMILY FYVE/PHD zinc finger 394 458 IPR011011 -
Acco10g1004 843 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 22 843 - -
Acco10g1004 843 MobiDBLite consensus disorder prediction 155 169 - -
Acco10g1004 843 MobiDBLite consensus disorder prediction 505 588 - -
Acco10g1004 843 MobiDBLite consensus disorder prediction 505 524 - -
Acco10g1004 843 Pfam PHD-finger 404 451 IPR019787 -
Acco10g1004 843 MobiDBLite consensus disorder prediction 472 487 - -
Acco10g1004 843 ProSiteProfiles BAH domain profile. 716 842 IPR001025 GO:0003682
Acco10g1004 843 MobiDBLite consensus disorder prediction 298 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g1004 Acco-ChrAcco10 23936432 23940705 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g1004 414 495 C2H2 Transcription Factor Family AT3G01460 29.885 6.36e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Acco10g1004 PHD 1e-08 CL0390