Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g0884 ATGGCTTCCGGTTTTGTATTCGAAGCTCCCAGCGACGAAGAAATCGAACGCTCTGATTCTGAAGACGAAGAACAGGAGCAAAGCCAAGAAGAGGAAGCAGAAGAGCAGAGTAGCTCTGATAATGATGATGACGATGGTGAAGAAGAAGAAGAAGAAGGAGCACGAGTTTCGAATAAGAAAACTCAATCTCCGTGGGACTTCGCGAAGTACTCTGAGTCTGTCGCGGAGGAACATGCCCGACGAAGCACTACCTCAGTGGATCAGAAAATTGCCAAAGCCATTAAAGAACGCGACGCCTCGCTAAGAAAGCCCGTTGAAGACGACCAGGAGAGCTCGGAGTCCGAACCCGACAAACAAGAGGATTATAGACCAGAAGAGGAAGAAGATGAAGGTGGCAATGAAGGCGAGAGCAAGTCTTTCTTCGCGCCATCTGACGGAGCTTCATTCCATGCTGACTCATTTATGGAGCTTAATTTGTCGCGTCCTTTGCTTCGTGCTTGTGAGGCCTTAGGATACGTTAAACCGACCCCAATTCAGGCAGCGTGTATACCACTTGCATTGACTGGTCGTGATATATGTGGAAGTGCCATTACCGGTTCTGGGAAGACAGCTGCATTCTCACTGCCTACTCTGGAGAGGCTTTTGTATCGTCCCAAACGTGTGCAGGCCATAAGAGTCCTCATTCTTACTCCAACCAGAGAATTGGCGGTTCAAGTTCACAGTATGATTGAGAAGCTTGCTCAGTTTACTGATATAAGGTGTTGCCTGGTTGTTGGGGGTCTGTCTACAAAGGTGCAAGAGGCGGCCTTGAGATCTATGCCAGATATTGTTGTTGCTACTCCAGGACGCATGATAGATCATTTACGCAATTCTATGTCAGTGGATTTAGATGATCTTGCTGTTCTTATCCTTGATGAGGCAGATCGTCTATTAGAGCTTGGATTTAATGCTGAAATTCATGAACTTGTTCGTTTGTGTCCCAAGAAAAGGCAGACCATGCTATTTTCAGCTACCATGACTGAGGAGGTCGATGAACTTATTAAACTTTCTCTGACAAAACCCTTGCGTCTTTCTGCTGACCCATCTGCAAAACGGCCAGCAACCCTGACTGAGGAGGTGGTTAGAGTAAGAAGAATGCGCGAAGTAAATCAGGAAGCAGTTCTTCTTGCATTGTGTTCCAAAACTTTTACATCTAATGTGATTATATTCAGTGGAACAAAACAAGCTGCACATAGGTTGAAGATTATATTAGGATTAGCTGGCTTAAAAGCTGCTGAGCTTCATGGAAATCTTACTCAGGCCCAGCGCCTTGAATCTTTAGAGCAGTTTAGGAAGCAGGAAGTTGACTTTTTGGTTGCAACTGATGTGGCTGCTCGAGGCCTAGATATTATTGGTGTTCAAACAGTCATCAACTTTGCATGTCCGCGAGATCTTACCAGTTATGTTCATCGAGTAGGACGTACTGCAAGAGCTGGCAGAGAAGGATATGCTGTCACTTTCTTGACTGACAATGACCGGTCACTTTTAAAAGCAATTGCAAAGAGGGTGGGTTCAAAGCTGAAGAGCCGTATTGTTGCAGAGCAATCTGTAATCAAGTGGTCTCAAACTATTGAGCAAATGGAGGATGAAATTGCTGCAATTATTGAAGAAGAGAGGGAGGAAAGAGCCCTAAGGAAAGCTGAAATGGAAGCAACGAAGGCTGAAAATATGATTGAGCATAGGGAAGAGATATATTCCCGGCCCAAAAGAACTTGGTTTATGACAGGGACAGAGAAGAAGCTTGCTGCAAAGGCAGCCAAGACGTCTAACAAAAAGGAAAAGAGCTCTGGGAAGGAAGTAATTAGTGCGGAACAAGCTGAAGCCCTAAGAATGAAGGAAAAGAGGAAGCAAGAGCGAGAAAAAAATTTGCCCAGGAAGAAGCGCAGAAAATTGGAAGCTGCTAGAGAGATGTTGGAGGACGAAGGTCATTTTGAGAAGCCAGAAGCCAATGAGAAAAATAAGAAAGAAAAGACTGGAATGTCACTCGTTGATGTGGCATACCGAAGAGCAAAAGCAGTTAAAGCAGTGAAGAAGGCTCTAGATGCAGGCAAAATTGTGAAGAAGGGTAAGAATAAATCGAATAGTTCTTCACGCAAGACTCCTTCAAGGACAGAGGAAATGCGGGAGCTTTTCCAAACTGATATGAGTGAGAAAAAACAAAAAAGAGTTGGTGGACGAGGGAAGAAGTCCAAAAGTTCATTCAAAAGCAAGTCAAGGTATAAGCGCAGGTAG 2271 0.4465 MASGFVFEAPSDEEIERSDSEDEEQEQSQEEEAEEQSSSDNDDDDGEEEEEEGARVSNKKTQSPWDFAKYSESVAEEHARRSTTSVDQKIAKAIKERDASLRKPVEDDQESSESEPDKQEDYRPEEEEDEGGNEGESKSFFAPSDGASFHADSFMELNLSRPLLRACEALGYVKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPTLERLLYRPKRVQAIRVLILTPTRELAVQVHSMIEKLAQFTDIRCCLVVGGLSTKVQEAALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFNAEIHELVRLCPKKRQTMLFSATMTEEVDELIKLSLTKPLRLSADPSAKRPATLTEEVVRVRRMREVNQEAVLLALCSKTFTSNVIIFSGTKQAAHRLKIILGLAGLKAAELHGNLTQAQRLESLEQFRKQEVDFLVATDVAARGLDIIGVQTVINFACPRDLTSYVHRVGRTARAGREGYAVTFLTDNDRSLLKAIAKRVGSKLKSRIVAEQSVIKWSQTIEQMEDEIAAIIEEEREERALRKAEMEATKAENMIEHREEIYSRPKRTWFMTGTEKKLAAKAAKTSNKKEKSSGKEVISAEQAEALRMKEKRKQEREKNLPRKKRRKLEAAREMLEDEGHFEKPEANEKNKKEKTGMSLVDVAYRRAKAVKAVKKALDAGKIVKKGKNKSNSSSRKTPSRTEEMRELFQTDMSEKKQKRVGGRGKKSKSSFKSKSRYKRR 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g0884 756 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 387 531 IPR001650 -
Acco10g0884 756 MobiDBLite consensus disorder prediction 623 673 - -
Acco10g0884 756 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 106 710 - -
Acco10g0884 756 MobiDBLite consensus disorder prediction 693 756 - -
Acco10g0884 756 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 183 357 IPR014001 -
Acco10g0884 756 SMART ultradead3 171 372 IPR014001 -
Acco10g0884 756 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 152 180 IPR014014 GO:0003724
Acco10g0884 756 MobiDBLite consensus disorder prediction 1 142 - -
Acco10g0884 756 Pfam DEAD/DEAH box helicase 176 346 IPR011545 GO:0003676|GO:0005524
Acco10g0884 756 Pfam Helicase conserved C-terminal domain 388 492 IPR001650 -
Acco10g0884 756 Gene3D - 359 528 IPR027417 -
Acco10g0884 756 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 303 311 IPR000629 -
Acco10g0884 756 SMART helicmild6 411 492 IPR001650 -
Acco10g0884 756 MobiDBLite consensus disorder prediction 712 734 - -
Acco10g0884 756 MobiDBLite consensus disorder prediction 110 133 - -
Acco10g0884 756 Coils Coil 530 577 - -
Acco10g0884 756 MobiDBLite consensus disorder prediction 735 756 - -
Acco10g0884 756 Gene3D - 109 358 IPR027417 -
Acco10g0884 756 Coils Coil 614 634 - -
Acco10g0884 756 MobiDBLite consensus disorder prediction 14 51 - -
Acco10g0884 756 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 224 512 IPR027417 -
Acco10g0884 756 CDD DEADc_DDX27 163 358 - -
Acco10g0884 756 CDD SF2_C_DEAD 385 501 - -
Acco10g0884 756 MobiDBLite consensus disorder prediction 71 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g0884 Acco-ChrAcco10 22661350 22671377 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g0884 132 514 Eukaryotic Initiation Factors Gene Family AT1G72730 33.679 2.03e-52 186