Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g0743 ATGGTTCTAGTAGGGTTTGATTGGCACTTGACGGTTGGGAATAAGAAGAGGATCTGTGTTCAAGAACATGGGTTTGGTGGGTCGTTGGAAAGGGATGCGACAAGCATTGTTGGAAAGCTTGGAGTGTCATTGCTGTCAAAAATATCAGTTTATTCTTTTTTCTCCAACTCAAAATCCACCTCAGCAGTCCATGCCCATGGTGCTCTGGTAGGGGCGACAGTGATTTTTTGGGTCAAGGTGCAGGTGATGATGGGATTTGATGCTCTACCTCTTGGATCCCAAGAGTTGGAGGAAGACAATGGATCTGATGAAGGAGCTGGAGGAAGAGAAGAAAATGATGGTGACATTGGACATGGTGATCAAGGGGAAGAAGAAGAAAATTCGCTTCAGTTCAGATTGTTGGTTTGCTTAGCCATGAATTTTCCTGGTTGGAATTTTGAGAATGATGCTTGTGTCACCAATCAAAAGAAGCCCATGGGGCCGGACCAAGAGATTGTGGAGCTGATATGGCAAAATGGACAGGTAGTTATGCACAGCCAAACACAAAGAAAACCAGCTGCAGATTCTCTCGACACGAGACAGTTCCAGAAAAATGACCAATCAACAATCAGGGCTGATGAGTCGTATGGGAACTCAAGTAATTTGATTCAAGAAGAAGACGCAGTCTCATGGATTCAATATCCACTCGAGGATCCATTGGAACAACAACTCTGTTCCAACATTTTATCTGAACTGCCATCCTCTGGACTTGAGCCTGACAAGCCAATAAGGCAACTCGAGGAGGGAAAGTATGTCAAATTCGGCCCCTACAGTGCCTGCCATGTGACTGCAAGTTCACAAACACCAAATATAAAAGCCTTTTCTCACGAGTTATCAGGAAATCCTATGCCTGCTGCAAGAGTTCATTTTCCGGATTCAACCCAGAAAAATATTAATTTTGGTGGATCACAAAATGTCTTCAATTTTCCTCGGTTTTCAGAACCCTCCAAAGTAGCCTCAACATCTTCTAATGCAGAGTCTGAAGATAAAGGTAATAGTAATCTGTTGAAAAACAAGGGCAAAGAGTGCTCGGCCATGACCGTTGGGTCAAGTCACTGTGGCAGCAACCAAGTCCCTCCAGATCCTGACATAAGCAGGGCATCAAGTAATGCGGTTTGGACTACTGCTTTATATTCTGAGCCTGAACCCCAGAGGGATGGTGTCCAGAAATCAATTCCTCAGAGTGAAAAAGGGAGGCCAGAGGTGCTTGAACCCACTTTGAGTTCATCATCAGATGACTCGGGTAGTCTTGCGAAAACTTGCTCCTGGTCTGCAAGAAGCCATGGCCAAAAAAGGAAAAAGATCGATGCAGAAGAATTAGAGGAGCAAAGTGAGGCCGCAGAACCCAAATCGGCTGTTGAAAACAAGGCAGCTCAGGGGACAAGGCCTTCTCGAAGGAACCGTGCAGCTGAAGTGCATAATCTCTCAGAAAGGAGACGAAGAGATCGGATCAATGAGAAGATGAGGACATTGCAACAACTCATACCTCATAGTAACAAGACAGATAAAGCATCAATGTTGGATGAGGCAATTGAGTACTTGAAATCGCTTCAATTACAACTTCAGGTAATGTGGATGGGAGCTGGAATGGCGCCAATGATGTTCCCAGGAATTCAACACTATATGTCCCAAATGGGTATGGGAATGGCTTCGCCTTCTTTTCCTCCTATTCCCAATCCAGTGCAACTACCAAGAACTTCACATGATCATTCCATGTCGATGGCTCAGACGCCAACCCAGGGTTTGATGCATCAAGCTCCTGTTATGGGTCCCTTTACTTATCAAAATCAGATGCAAAACCAAGCTTTCTCGGAGCAATACGCACGTTATATGGGTTATCAATTCATGCAAAGTGCCTCCTCTCAGCCGATGAATGGATTTAATTTTGGATCTCAAGTACAACATAGTCAAACAATGATTCCACCCATCTGTAGCAGTGGACCAAATAATGATGATAATTTAAGGGGCAAGATGGGTTAA 2019 0.4443 MVLVGFDWHLTVGNKKRICVQEHGFGGSLERDATSIVGKLGVSLLSKISVYSFFSNSKSTSAVHAHGALVGATVIFWVKVQVMMGFDALPLGSQELEEDNGSDEGAGGREENDGDIGHGDQGEEEENSLQFRLLVCLAMNFPGWNFENDACVTNQKKPMGPDQEIVELIWQNGQVVMHSQTQRKPAADSLDTRQFQKNDQSTIRADESYGNSSNLIQEEDAVSWIQYPLEDPLEQQLCSNILSELPSSGLEPDKPIRQLEEGKYVKFGPYSACHVTASSQTPNIKAFSHELSGNPMPAARVHFPDSTQKNINFGGSQNVFNFPRFSEPSKVASTSSNAESEDKGNSNLLKNKGKECSAMTVGSSHCGSNQVPPDPDISRASSNAVWTTALYSEPEPQRDGVQKSIPQSEKGRPEVLEPTLSSSSDDSGSLAKTCSWSARSHGQKRKKIDAEELEEQSEAAEPKSAVENKAAQGTRPSRRNRAAEVHNLSERRRRDRINEKMRTLQQLIPHSNKTDKASMLDEAIEYLKSLQLQLQVMWMGAGMAPMMFPGIQHYMSQMGMGMASPSFPPIPNPVQLPRTSHDHSMSMAQTPTQGLMHQAPVMGPFTYQNQMQNQAFSEQYARYMGYQFMQSASSQPMNGFNFGSQVQHSQTMIPPICSSGPNNDDNLRGKMG 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g0743 672 CDD bHLH_AtPIF_like 481 544 IPR047265 -
Acco10g0743 672 MobiDBLite consensus disorder prediction 94 123 - -
Acco10g0743 672 MobiDBLite consensus disorder prediction 183 207 - -
Acco10g0743 672 MobiDBLite consensus disorder prediction 327 390 - -
Acco10g0743 672 Gene3D - 477 537 IPR036638 GO:0046983
Acco10g0743 672 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 478 545 IPR036638 GO:0046983
Acco10g0743 672 PANTHER TRANSCRIPTION FACTOR PIF3 151 645 IPR044273 GO:0003700|GO:0006355
Acco10g0743 672 SMART finulus 487 536 IPR011598 GO:0046983
Acco10g0743 672 MobiDBLite consensus disorder prediction 102 123 - -
Acco10g0743 672 MobiDBLite consensus disorder prediction 442 462 - -
Acco10g0743 672 MobiDBLite consensus disorder prediction 479 494 - -
Acco10g0743 672 MobiDBLite consensus disorder prediction 417 438 - -
Acco10g0743 672 MobiDBLite consensus disorder prediction 652 672 - -
Acco10g0743 672 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 481 530 IPR011598 GO:0046983
Acco10g0743 672 FunFam Basic helix-loop-helix transcription factor 476 539 - -
Acco10g0743 672 Pfam Helix-loop-helix DNA-binding domain 485 531 IPR011598 GO:0046983
Acco10g0743 672 MobiDBLite consensus disorder prediction 327 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g0743 Acco-ChrAcco10 20282230 20288513 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g0743 357 644 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G59060 40.125 6.62e-40 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco10g0743 HLH 2.3e-14 No_clan