Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g0731 ATGGGCTCGAGTGCATTATTGCTTTTGAAACTAGCATTATTGGCGGCCTACTACACGCCGGCCGCGGTGCCAGCTCCGGCGTGCCCAGCGCATGGCATTAAAAAGTGCGGGAACGTGGATATCTCCTATCCCTTTGGCACGAAGGAAGATGGCTGCTTCAAAGATCCCGATTTTCAAATAAACTGCAGACACGACTCTTCTAACGGACACCGCACTCCGTACCTAGCAAGAGAAATCTATGAGGATCACGACATAGAGGTTCTCAAAATCTCTGAGAATACTAGTGAGATTTATGTCTCTATGCCTGTTTCTTATGCTCGCTACGACCCGAAAAATAGCGACGATTACCATCACTGGGATCGTTTTCAGATGCCTTCCAAGTTTGGCATATCCAATAAAAAGAACAATTTCTTCGTACGGGGCTGTGAAACCTATGCGTTCCTCTATGACCACAAAGGAAAAAGACTTAACGGCTGCGACACGAGGTGCAGTAACGACGAGAGTTCTTCAGTGACGAGTAATAATGGAACATGCCAGAGTGATTTTGAGCTAGCCGTTGCAAATTATACTATTAATATTATTTTTTACGATAGCTACGACGAGATTAATTCATCAATGATAAGGTGCAGCTATGCATTTGTTGCACAGAACGGATCTTTTAACTATTCCGACGACAACGACTTCAAGAAGATAAGAGAAACTAACAGATCTACGGTGGTTCTCGATTGGGCTGTTGATAAAACGAATTCATGTGGTGGAGCCTGCAAAAGTAATAATAGTGAATGCGTTGAATCAGAAAGTGTCAGTGGCCACTACTTCTGCAGCTGTAAACATGGGTTCCTGGGCAACCCCTACAGGGACGATGGCTGCAAAGATGTGAATGAGTGCCAGGACAGCAACTTAAATAAGTGCTTGCATCAGAAGCTTTGCCAAAATACGGATGGAGGCTACAAATGTTCTTGTCCACGTGGACAAAAAGGCAATGGAACTGTAGAAGGCTCAGGCTGTAGCCCTATCATCACAATTCCATTAGTTGTTACTATAGCTTTGTTGGGTGTCTTCACAATGGTCTTCATATTCTGTTGGGCACACAAGCAAAGAACTTTGAAACAACTACGACAGAGAAACTTTGAGCAAAATGGTGGAAACTTGCTTCTACAACAACTTTCACAACAACAAAGATACACTAACAAAACTAGAATATTTACAGAAGTTGACCTGAAGAATGCCACAAACAACTTCGATGAAACTAAGATTCTTGGTCGTGGAGGACAAGGCACAGTTTTTAAAGGTACATTGTCAGATAACACACTTGTTGCTATTAAGAAGTCTAGGGTTGGAGGGGATCCTCAACATATTAAAAGTTTTATCAATGAAATGTTTGTGCTTTCCCAAATCAACCATAGGCATGTCGTCAAACTTTTGGGATGTTGTCTTGAGACTGAAGTGCCCTTGTTAGTTTATGAGTTTGTAGATAACGGCTCACTTCTTGACCACCTAGACCCATCAGAAAATGAATTTTCTATTACATGGGACACTCGGTTAAGAATAGCTTCAGAAACTGCTGGGGCCATTTCATATTTACATTCTTCTGCTTCAATTCCAATTATCCATCGTGATATTAAATCTGCAAACATACTTTTAGACCACAACGACACAGCAAAGGTGTCTGATTTTGGAGCTTCAAGACTTGTCCATCTTGATGAAGCTCAAGTTGCCACTGTAGTTCAGGGAACAGTAGGATACCTAGATCCAGAGTACCTTCAGACGGGTCTGTTGAATGAGAAGAGTGATGTGTATAATTTATTATTATTAGAGAATAGTTAA 1827 0.4171 MGSSALLLLKLALLAAYYTPAAVPAPACPAHGIKKCGNVDISYPFGTKEDGCFKDPDFQINCRHDSSNGHRTPYLAREIYEDHDIEVLKISENTSEIYVSMPVSYARYDPKNSDDYHHWDRFQMPSKFGISNKKNNFFVRGCETYAFLYDHKGKRLNGCDTRCSNDESSSVTSNNGTCQSDFELAVANYTINIIFYDSYDEINSSMIRCSYAFVAQNGSFNYSDDNDFKKIRETNRSTVVLDWAVDKTNSCGGACKSNNSECVESESVSGHYFCSCKHGFLGNPYRDDGCKDVNECQDSNLNKCLHQKLCQNTDGGYKCSCPRGQKGNGTVEGSGCSPIITIPLVVTIALLGVFTMVFIFCWAHKQRTLKQLRQRNFEQNGGNLLLQQLSQQQRYTNKTRIFTEVDLKNATNNFDETKILGRGGQGTVFKGTLSDNTLVAIKKSRVGGDPQHIKSFINEMFVLSQINHRHVVKLLGCCLETEVPLLVYEFVDNGSLLDHLDPSENEFSITWDTRLRIASETAGAISYLHSSASIPIIHRDIKSANILLDHNDTAKVSDFGASRLVHLDEAQVATVVQGTVGYLDPEYLQTGLLNEKSDVYNLLLLENS 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g0731 608 SMART serkin_6 414 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco10g0731 608 CDD EGF_CA 292 327 - -
Acco10g0731 608 FunFam Wall-associated receptor kinase 2 384 490 - -
Acco10g0731 608 SMART egf_5 250 291 IPR000742 -
Acco10g0731 608 SMART egf_5 295 337 IPR000742 -
Acco10g0731 608 Pfam Wall-associated receptor kinase galacturonan-binding 30 99 IPR025287 GO:0030247
Acco10g0731 608 Pfam Calcium-binding EGF domain 292 330 IPR001881 GO:0005509
Acco10g0731 608 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 29 601 IPR045274 GO:0007166
Acco10g0731 608 ProSitePatterns Calcium-binding EGF-like domain signature. 292 319 IPR018097 GO:0005509
Acco10g0731 608 Gene3D Phosphorylase Kinase; domain 1 386 490 - -
Acco10g0731 608 SUPERFAMILY Protein kinase-like (PK-like) 392 600 IPR011009 -
Acco10g0731 608 SMART egfca_6 292 337 IPR001881 GO:0005509
Acco10g0731 608 ProSiteProfiles Protein kinase domain profile. 414 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco10g0731 608 SUPERFAMILY EGF/Laminin 292 328 - -
Acco10g0731 608 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 310 321 IPR000152 -
Acco10g0731 608 Pfam Protein tyrosine and serine/threonine kinase 417 601 IPR001245 GO:0004672|GO:0006468
Acco10g0731 608 Gene3D Transferase(Phosphotransferase) domain 1 491 605 - -
Acco10g0731 608 ProSiteProfiles EGF-like domain profile. 292 331 IPR000742 -
Acco10g0731 608 FunFam Fibrillin 2 287 332 - -
Acco10g0731 608 Gene3D Laminin 245 334 - -
Acco10g0731 608 ProSitePatterns Serine/Threonine protein kinases active-site signature. 536 548 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g0731 Acco-ChrAcco10 19355267 19361370 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g0731 1 606 Receptor kinase-like Gene Family AT1G21230 41.614 4.27e-142 428
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Acco10g0731 PK_Tyr_Ser-Thr 1.9e-37 CL0016