Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g0615 ATGCTCCAAGCGCCGAAGGAGCAATCTGGCCTCATAGATTTTCACATATCTTCAGTTGTGGCTACCGCAAGGAGGTTGCCTTCTGATGCAGGCGCTTTTGCTGATTGGGCAGCTTCTTCCACCGGCCGAGCTGTCCCCGCCGACGAGCTCTCCCTCGGCTTTAATGCCGGCCCTGCTGCCACCGCGGCCGTTGGATCCGCAGCTGGTTCTTCCTCCGGAATGTGGTCTGGTGCCGCCGCGAGGTCGATCAATTATGGTCTCTCGCAGGACATGGGAGGCGGCATGCTGGGCCTCCGCGATCTCTACGTGGTGGCTCCGGCGTCGTCGTTTCACCACCACCACCATCACCACCACCATGACCCGTCAGTTATGACCGATCCTCATTCCGTTAACAGCTCTAACCCCGCAACCGCGCTCGGCGTCGGCGTTATTCCTCTCCTCACTGCCACTCCGTGTCTCAGCCCGGCGAACATAGAGAACAACGAGGTGACAACATTGATGAATAATCGAAGCCGAGGTGGCGCAATTCAGCTATGGCAAGACCTGGAATCTGAACATGGTCATTATTTGAAGAAACAAGGTACAACGATGTTTGAGCTGAATGACAGTTCCGCGAATCTGGTTCAGAACGAGAATGGCTTAACAGTCTCCGCGGCGAACAGCGGCGGCGGGGCCACTTGTCAGGACTGTGGGAACCAAGCGAAGAAGGATTGTATTTACAGGAGGTGTAGGACTTGCTGTAAGAGTCGGAATTATGACTGCCCTACTCACGTGAAGAGCACGTGGGTGCCAGAGTCCCGTCGGAGGGAACGCCGCTTGATGGCCGCTGCGGCGGCCGCGACAAACACTGCCGGTGGTGGATCCACCGGTGCTACTTCTGGTGCCAAGAAACCTAGACTCGTCACATCACAACAACAAACCACAACAAATTCTCACACCTCCACTTCTAACACCACTCCTAGAAGCTTCGATACTAGCTCTAGCCACCAAGATGCGGGTTTTAAGGAATCACTACCGGGGCAAGTGCGGGCTCCGGCGGTGTTCAAGTGTGTTCGGGTGACGGCGGTGGATGACGGGCAGGATGAGTTTGCATATCAGGCTACTGTGAAGATTTGTGGCCATGTGTTTAAAGGGCTTCTGTATGATCAAGGGGTTGAAGGTAGAGAGGTGTATCCGAATTTGTCGGAGCTTCATCTCGGTGGTGGTGGCTGTGGCCGAGGTGGTGGTGGAGGGAATGGGGCTTCTTCGTCATCACCAATTCTGGATCCATCTGATATGTATGCAGCTTCAGGTGGAGGTTTACTTGGAGGAGGATCAACTTATGGTAATCCAATAAATTAA 1341 0.5459 MLQAPKEQSGLIDFHISSVVATARRLPSDAGAFADWAASSTGRAVPADELSLGFNAGPAATAAVGSAAGSSSGMWSGAAARSINYGLSQDMGGGMLGLRDLYVVAPASSFHHHHHHHHHDPSVMTDPHSVNSSNPATALGVGVIPLLTATPCLSPANIENNEVTTLMNNRSRGGAIQLWQDLESEHGHYLKKQGTTMFELNDSSANLVQNENGLTVSAANSGGGATCQDCGNQAKKDCIYRRCRTCCKSRNYDCPTHVKSTWVPESRRRERRLMAAAAAATNTAGGGSTGATSGAKKPRLVTSQQQTTTNSHTSTSNTTPRSFDTSSSHQDAGFKESLPGQVRAPAVFKCVRVTAVDDGQDEFAYQATVKICGHVFKGLLYDQGVEGREVYPNLSELHLGGGGCGRGGGGGNGASSSSPILDPSDMYAASGGGLLGGGSTYGNPIN 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g0615 446 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 109 430 IPR007818 GO:0003700|GO:0006355
Acco10g0615 446 MobiDBLite consensus disorder prediction 282 334 - -
Acco10g0615 446 Pfam Domain of unknown function (DUF702) 224 386 - -
Acco10g0615 446 MobiDBLite consensus disorder prediction 273 338 - -
Acco10g0615 446 NCBIfam LRP1 C-terminal domain 338 385 IPR006511 -
Acco10g0615 446 MobiDBLite consensus disorder prediction 112 132 - -
Acco10g0615 446 NCBIfam putative zinc finger domain, LRP1 type 226 268 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g0615 Acco-ChrAcco10 16972595 16975083 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g0615 20 426 C2H2 Transcription Factor Family AT5G12330 49.043 4.04e-101 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Acco10g0615 DUF702 6.4e-60 No_clan