Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g0611 ATGCTCCAGTTTCCTTCTTCGTCACAGTCTGTCAATGACCTCAGCTCAGTGACATCACTGGAATTTTCGAAGTTCTCTACTCATTTCTCGATCTGCCTTACTTCATCACCGAGGTCACGGACTGATAGCATGGCTTCGGATCTTAGCAGAGCTGGTCCCGTGGAAAGAGACATTGAGCAGGCCATTACTGCATTGAAAAAAGGGGCCTGCTTGCTCAAGTATGGAAGAAGAGGGAAGCCCAAGTTTTGCCAGATTCGGCTTTCCAATGATGAATCTGCTTTGATATGGTTCTCAGGGAAAGAGGAGAAGCACCTTAAACTAAGTCATATTTCTAAAATTATATCCGGACAACGTACGCCAATCTTTCAAAGATATCCACGGCCTGAGAAAGAATACCAGTCATTTTCTCTTATCTACACTGATAGGTCACTGGACTTGATTTGCAAAGATAAAGATGAAGCTGAGGTTTGGTTCAGTGGTTTGAAAGCATTAATATCACGTTTCTATCACCAGAAGTGGAGAACTGAGTCAAGAAGTGATGGTTTTCCATCTGGGGCTAGTAGTCCCAGAACATACACCAGAAGAAGTTCCCCTTTAAATTCTCCATTTGATAGCAATGAAAGCTTGCAAAAGGACAGTGGGGATCACCTTCGCCTTCATAGTCCCTTTGAGAGCCCCCCTAAAAATGGTTTGGACAAAGCTTTATCTGATGTGATATTTTATTCTGTTCCTCCAAAGGGTTTCTTCCATCCAGATTCTACTAGTGGTTCAGTCCTCTCAGTGTCATCAGGAGGATCAGATAGTTTACACGGTCACATGAAAGCAATGGGCATGGACGCCTTTAGAGTAAGCCTATCAAGTGCTGTCAGCTCATCCAGCCAGGGTTCTGGTCATGATGATGGTGATGCCTTAGGGGATGTTTTCATTTGGGGGGAAGGCACTGGTGATGGTGTTTTGGGTGGTGGGACTCACAATCTTGGTGGAAAAATGGATTCTCTACTGCCCAAGGCCTTGGAATCTGCAGTAGTACTTGATGTACAGAACATAGCTTGTGGTGGACAACATGCCGCCTTGGTGACCAAGCAAGGAGAAATTTTCTCTTGGGGGGAGGAATTAGGAGGCAGGCTTGGGCATGGCGTTGACTCTGATGTTCTTCATCCAAAACTTATAGAATCTCTAAGCAATACAAATATTGAACTTGTAGCTTGTGGGGAGTACCATACATGTGCTGTGACTCTTTCTGGTGATCTTTATACATGGGGTGATGGCACCTACAATTATGGTCTTCTGGGGCATGGAAATCAAGTGAGCCACTGGGTCCCCAAAAAAGTAAATGGGCCTTTGGAGGGCATACACGTTTCATCTATCTCTTGTGGTCCATGGCACACTGCAGTTGTTACCTCTGCAGGGCAATTGTTCACTTTTGGTGACGGTACATTTGGTGTTCTGGGTCATGGGGACAGAAAAAGTGTAACAATACCGAGAGAAGTAGAGTCCCTTAAGGGTCTTCGTACTGTGCGAACTGCTTGTGGTGTCTGGCATTCTGCTGCAGTTGTAGAAGTCATGGTCGGAAATTCAAGTTCCAGCAACTGCTCTTCAGGGAAGCTGTTTACTTGGGGTGATGGTGACAAAGGTCGACTTGGGCATGGTGACAAGGAAGCAAAACTAGTTCCTACCTGTGTTGCAGCGCTGGTTGAACCTAACTTTTGTCATGTTGTGTGTGGACACAGTCTTACTGTTGCACTTACTACCTCAGGCCATGTCTATACCATGGGCAGTCCTGTCTATGGCCAACTAGGAAATCTTCATACTGATGGCAAGTTACCTAAACGTGTTGAAGGAAAGCTCTCAAAGAGTTTTGTGGAAGAGATAGCTTGTGGTGCATATCATGTTGCAGTTTTAACTTCAAGGACTGAAGTTTACACATGGGGCAAGGGTTCAAATGGACGTTTAGGCCATGGGGATATAGAGGATAGAAATACTCCAACATTGGTGGAAGCTCTGAAAGACAAACAAGTCAAAAGTATTGCCTGCGGTACTAATTTCACTGCTGCTATCTGTCTTCATAAGTGGGCCTCTGGTGTTGATCACTCCATGTGTTCTGGCTGCCGTCTACCTTTTAATTTCAAAAGAAAACGTCATAATTGTTATAATTGTGGACTTGTTTTTTGTCATTCTTGCAGCAGTAAGAAGTCTGTTAAGGCTTCTATGGCACCAAATCCCAACAAGCCTTATCGGGTTTGTGATAATTGTTACAATAAACTAAGGAAAACTATTGAAACTGATACTTCATCTCATTCTTCTATGAGCAGAAGAGGAAGTATCAATCAGGGGCCACTTGAGTTTAATGACACTGATGATAAATTTGACTCAAGATCTCGTAATCAGCTTGCTAGGTTTTCTTCAATGCAATCCTTCAAGCAAGTGGAAAGCAGATCTTCAAAGAAAAACAAGAAATATGAATTCAATAGTAGCCGAGTCTCACCCATTCCGAATGGAGGTTCCCAGTGGGGGGCATCAAATATTTCTAAATCTGTCAATCCTATTTTTGGATCATCAAAGAAGTTTTTCTCAGCCTCTGTTCCAGGATCTAGAATTGTTTCTCGAGCAACATCCCCAATATCTAGACATCATAGTCCACCTCGTTCAACAACTCCAACCCCAACACTTGGAGGACTTACCTCCCCAAGGATAGGTGTGGATGATGTTAAGAAGACAAACGATAGCCTTAACCAAGAGATTATTAAATTAAGAGCGCAGGTGGAAAATATGACTCGCAAAACTCAACTTCAAGAAGTTGAGTTGGAAAGAGCAACTAAACAGCTGAAGGAAGCAATAGCATATGCTGGTGAAGAAACTGCCAAATGCAAGGCAGCAAAGGAAGTGATCAAGTCGCTTACTAACCAGCTGAAGGAAATGGCTGAGAAGCTTCCTGCTGGAGCATCTAGGAATGTGAAATTTCCTTCTGTTGCTTCCTTTGAATCAAATCCTTGTTCTAATGAAGGTAATTCTTCTACTGATGGATTAAACATTCAAGCTGCTAGCCTAGAACCAGACTTAGCGGCATTGAACAACCTGTCTCTTTCAAACGGATCAAGTACCATCAGTAATCGAAGTGCTGGTCACAACAAACAGAGCCAGTCAGATGCAACAGCGATTAGAAATGGGAGCAGAACAAAGGAAGGCGAGACTCGTGGTGAGGGTGGATGGGTTGAGCAAGATGAGCCTGGAGTATATATTACATTTACCTCCCTCGCAGGTGTGGTAGATCTTAAGAGAGTTCGTTTCAGTCGAAAGCGGTTTAGTGAGAAGCAAGCAGAACAATGGTGGGCCGAGAATCGGGCAAGAGTATATGAGAAGTACAATGTACGTGTGACTGACAAGTCAGCCATGGAAGAAACAATCTGTAAATGA 3414 0.4367 MLQFPSSSQSVNDLSSVTSLEFSKFSTHFSICLTSSPRSRTDSMASDLSRAGPVERDIEQAITALKKGACLLKYGRRGKPKFCQIRLSNDESALIWFSGKEEKHLKLSHISKIISGQRTPIFQRYPRPEKEYQSFSLIYTDRSLDLICKDKDEAEVWFSGLKALISRFYHQKWRTESRSDGFPSGASSPRTYTRRSSPLNSPFDSNESLQKDSGDHLRLHSPFESPPKNGLDKALSDVIFYSVPPKGFFHPDSTSGSVLSVSSGGSDSLHGHMKAMGMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEGTGDGVLGGGTHNLGGKMDSLLPKALESAVVLDVQNIACGGQHAALVTKQGEIFSWGEELGGRLGHGVDSDVLHPKLIESLSNTNIELVACGEYHTCAVTLSGDLYTWGDGTYNYGLLGHGNQVSHWVPKKVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVTIPREVESLKGLRTVRTACGVWHSAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCHVVCGHSLTVALTTSGHVYTMGSPVYGQLGNLHTDGKLPKRVEGKLSKSFVEEIACGAYHVAVLTSRTEVYTWGKGSNGRLGHGDIEDRNTPTLVEALKDKQVKSIACGTNFTAAICLHKWASGVDHSMCSGCRLPFNFKRKRHNCYNCGLVFCHSCSSKKSVKASMAPNPNKPYRVCDNCYNKLRKTIETDTSSHSSMSRRGSINQGPLEFNDTDDKFDSRSRNQLARFSSMQSFKQVESRSSKKNKKYEFNSSRVSPIPNGGSQWGASNISKSVNPIFGSSKKFFSASVPGSRIVSRATSPISRHHSPPRSTTPTPTLGGLTSPRIGVDDVKKTNDSLNQEIIKLRAQVENMTRKTQLQEVELERATKQLKEAIAYAGEETAKCKAAKEVIKSLTNQLKEMAEKLPAGASRNVKFPSVASFESNPCSNEGNSSTDGLNIQAASLEPDLAALNNLSLSNGSSTISNRSAGHNKQSQSDATAIRNGSRTKEGETRGEGGWVEQDEPGVYITFTSLAGVVDLKRVRFSRKRFSEKQAEQWWAENRARVYEKYNVRVTDKSAMEETICK 1137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g0611 1137 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 349 359 IPR000408 -
Acco10g0611 1137 SMART fyve_4 688 757 IPR000306 GO:0046872
Acco10g0611 1137 Gene3D - 286 531 IPR009091 -
Acco10g0611 1137 Gene3D - 532 696 IPR009091 -
Acco10g0611 1137 MobiDBLite consensus disorder prediction 869 892 - -
Acco10g0611 1137 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 415 469 IPR000408 -
Acco10g0611 1137 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 534 585 IPR000408 -
Acco10g0611 1137 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 586 637 IPR000408 -
Acco10g0611 1137 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 697 768 IPR013083 -
Acco10g0611 1137 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 305 362 IPR000408 -
Acco10g0611 1137 MobiDBLite consensus disorder prediction 1033 1072 - -
Acco10g0611 1137 MobiDBLite consensus disorder prediction 762 781 - -
Acco10g0611 1137 SUPERFAMILY PH domain-like 57 165 - -
Acco10g0611 1137 Pfam Transcription factor BRX N-terminal domain 951 984 IPR027988 -
Acco10g0611 1137 MobiDBLite consensus disorder prediction 762 839 - -
Acco10g0611 1137 MobiDBLite consensus disorder prediction 178 208 - -
Acco10g0611 1137 SUPERFAMILY FYVE/PHD zinc finger 691 761 IPR011011 -
Acco10g0611 1137 FunFam PH, RCC1 and FYVE domains-containing protein 1 276 523 - -
Acco10g0611 1137 SUPERFAMILY RCC1/BLIP-II 304 691 IPR009091 -
Acco10g0611 1137 Coils Coil 956 976 - -
Acco10g0611 1137 SMART PH_update 64 168 IPR001849 -
Acco10g0611 1137 Pfam Regulator of chromosome condensation (RCC1) repeat 470 518 IPR000408 -
Acco10g0611 1137 Pfam Regulator of chromosome condensation (RCC1) repeat 585 634 IPR000408 -
Acco10g0611 1137 Pfam Regulator of chromosome condensation (RCC1) repeat 363 411 IPR000408 -
Acco10g0611 1137 Pfam Regulator of chromosome condensation (RCC1) repeat 414 466 IPR000408 -
Acco10g0611 1137 Pfam Regulator of chromosome condensation (RCC1) repeat 533 582 IPR000408 -
Acco10g0611 1137 Pfam Regulator of chromosome condensation (RCC1) repeat 639 686 IPR000408 -
Acco10g0611 1137 Pfam Transcription factor regulating root and shoot growth via Pin3 1069 1121 IPR013591 -
Acco10g0611 1137 FunFam Putative E3 ubiquitin-protein ligase HERC1 696 764 - -
Acco10g0611 1137 Gene3D - 57 172 IPR011993 -
Acco10g0611 1137 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 101 972 - -
Acco10g0611 1137 CDD FYVE_like_SF 699 752 - -
Acco10g0611 1137 MobiDBLite consensus disorder prediction 869 901 - -
Acco10g0611 1137 Pfam Unstructured region between BRX_N and BRX domain 992 1061 - -
Acco10g0611 1137 CDD PH_PLC_plant-like 56 166 - -
Acco10g0611 1137 MobiDBLite consensus disorder prediction 795 810 - -
Acco10g0611 1137 MobiDBLite consensus disorder prediction 176 228 - -
Acco10g0611 1137 Coils Coil 900 941 - -
Acco10g0611 1137 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 456 466 IPR000408 -
Acco10g0611 1137 MobiDBLite consensus disorder prediction 1056 1070 - -
Acco10g0611 1137 MobiDBLite consensus disorder prediction 1033 1055 - -
Acco10g0611 1137 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 363 414 IPR000408 -
Acco10g0611 1137 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 694 756 IPR017455 -
Acco10g0611 1137 ProSiteProfiles BRX domain profile. 1068 1122 IPR013591 -
Acco10g0611 1137 PRINTS Chromosome condensation regulator RCC1 signature 633 654 IPR000408 -
Acco10g0611 1137 PRINTS Chromosome condensation regulator RCC1 signature 415 431 IPR000408 -
Acco10g0611 1137 PRINTS Chromosome condensation regulator RCC1 signature 365 381 IPR000408 -
Acco10g0611 1137 PRINTS Chromosome condensation regulator RCC1 signature 456 472 IPR000408 -
Acco10g0611 1137 PRINTS Chromosome condensation regulator RCC1 signature 575 593 IPR000408 -
Acco10g0611 1137 PRINTS Chromosome condensation regulator RCC1 signature 346 359 IPR000408 -
Acco10g0611 1137 PRINTS Chromosome condensation regulator RCC1 signature 472 486 IPR000408 -
Acco10g0611 1137 MobiDBLite consensus disorder prediction 823 839 - -
Acco10g0611 1137 Pfam FYVE zinc finger 690 756 IPR000306 GO:0046872
Acco10g0611 1137 Pfam Pleckstrin homology domain 59 165 IPR001849 -
Acco10g0611 1137 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 638 689 IPR000408 -
Acco10g0611 1137 FunFam PH, RCC1 and FYVE domains-containing protein 1 524 695 - -
Acco10g0611 1137 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 470 521 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g0611 Acco-ChrAcco10 16838662 16848098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g0611 960 1132 Major Intrinsic Protein MIP AT1G31880 34.066 3.24e-15 77.0