Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g0587 ATGGGCAACTCTTGCATGAAGCCAGTTGCTCATGTTAATTCCTCCAATTTGATAGGAAGTACAAAGTCAAGTAAGACACAACAAAATTACAATTCTTCAGAAAAAAAAGCTTCTTTGCAAAGTTCAGCATCTGATCCTATCAGAATCATTTCCAGTAATCTCAAGTCCTTTTGCTTCAATGATCTAAAGGAAGCCACCAAGAACTTCCGTGAAGAAAATTTTATCGGAGAGGGAGGTTTTGGGCGTGTCTTCAAGGGATGGATTAACATGAGCACCTTTGCTCCTTCAAAACCAGGGAGTGGAATGGTAGTGGCCATTAAGCAGCTCAAACCAGAAAGCTTTCAAGGCCACAAGGAATGGCTTGCTGAAGTCAATTATCTAGGGCAGCTTCACCACGAGAATCTGCTGAAACTTATTGGTTATTGTTCAGAGGACAGAAATAGGCTTCTAGTTTATGAGTTCATGCAAAAAGGAAGCTTGGAGAATCATTTATTCAGAAAAAGTGTTCAGCCCCTATCTTGGCCGATCCGTATCAGTATTGCAATTGGTGTTGCAAGAGGATTAGCATTCTTGCATAGCCTGGATGCAAATGTCATTTACCGTGATTTAAAGGCTTCTAACATCCTACTTGATTCAGATTTCTATCCAAAGCTTGCAGATTTTGGTTTGGCCAGAGATGGTCCTACTGGAGATAACACTCATGTTTCAACCAGAGTTATTGGAACTCAAGGCTATGCTGCACCAGAGTATGTAGCAACAGGTCACTTGACTCCGAGAAGTGATGTCTACAGCTTTGGTGTCGTCTTGCTAGAGTTGTTAACTGGGAGACGAGCATTAGAAGATGACGGACCTGGGTCCATAGAAGAAACTCTGGTGGACTGGGCAAGGCCTTTTCTGAGTGATAACCGGCGAGTTTTGAGGATCATGGATACGAGGCTAGGCGGCCAATACTCCAAGAAAGGAGCTCAAGCTGCAGCTGCACTTGCATTGCAATGCTTGACCTCAGATCCTAGATACAGACCTCCAATGGTGGATGTTCTTGCCGCATTGGAATCTCTCAGTTCTTCAAGTTCAATCCCAAGGACCCCAAAATCTTTCAGTGATAATATTTCAAACAGGCATTCTAGTCCTAGTCATCCCCAAAAGCCAATCAGAAATCAAAGGTCTGTCTGA 1173 0.4314 MGNSCMKPVAHVNSSNLIGSTKSSKTQQNYNSSEKKASLQSSASDPIRIISSNLKSFCFNDLKEATKNFREENFIGEGGFGRVFKGWINMSTFAPSKPGSGMVVAIKQLKPESFQGHKEWLAEVNYLGQLHHENLLKLIGYCSEDRNRLLVYEFMQKGSLENHLFRKSVQPLSWPIRISIAIGVARGLAFLHSLDANVIYRDLKASNILLDSDFYPKLADFGLARDGPTGDNTHVSTRVIGTQGYAAPEYVATGHLTPRSDVYSFGVVLLELLTGRRALEDDGPGSIEETLVDWARPFLSDNRRVLRIMDTRLGGQYSKKGAQAAAALALQCLTSDPRYRPPMVDVLAALESLSSSSSIPRTPKSFSDNISNRHSSPSHPQKPIRNQRSV 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g0587 390 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 155 363 - -
Acco10g0587 390 SMART serkin_6 69 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco10g0587 390 MobiDBLite consensus disorder prediction 354 390 - -
Acco10g0587 390 Pfam Protein tyrosine and serine/threonine kinase 73 348 IPR001245 GO:0004672|GO:0006468
Acco10g0587 390 FunFam Serine/threonine-protein kinase BIK1 34 154 - -
Acco10g0587 390 CDD STKc_IRAK 75 346 - -
Acco10g0587 390 PANTHER OS01G0588500 PROTEIN-RELATED 33 353 - -
Acco10g0587 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Acco10g0587 390 SUPERFAMILY Protein kinase-like (PK-like) 44 356 IPR011009 -
Acco10g0587 390 Gene3D Transferase(Phosphotransferase) domain 1 155 371 - -
Acco10g0587 390 ProSitePatterns Protein kinases ATP-binding region signature. 75 107 IPR017441 GO:0005524
Acco10g0587 390 ProSiteProfiles Protein kinase domain profile. 69 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco10g0587 390 MobiDBLite consensus disorder prediction 16 38 - -
Acco10g0587 390 Gene3D Phosphorylase Kinase; domain 1 28 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g0587 Acco-ChrAcco10 15928907 15932434 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g0587 13 356 Glycoside Hydrolase AT3G07070 46.571 6.81e-100 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Acco10g0587 PK_Tyr_Ser-Thr 3.1e-47 CL0016