Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g0466 ATGGCGAAGGGAGGTGCCCTTCTCGTGAGTTCAAAGGCAGAGTTGAAACATAAGGGGAAGCAACAGAAGAAGGCCAAGTCTGGCGGTTTTGAGTCCTTAGGCCTTAGCCCCAATATCTACGGAGGAATCAAGCGCAAGGGTTATAAGGTGCCCACTCCAATTCAGAGGAAGACAATGCCTATAATTCTTTCGGGTGCTGATGTTGTTGCCATGGCTCGTACCGGGTCTGGTAAAACTGCTGCGTTTCTCGTCCCCATGCTTCAGCGTTTGAATCAGCATCTTCCTCAGGGTGGTGTTAGAGCTCTCATTTTGTCCCCTACAAGAGACTTGGCGCTTCAGACATTGAAGTTCACCAAAGAGCTTGGACACTTCACAGATCTTCGTGTTAGTTTATTAGTTGGAGGTGATAGTATGGAAAGTCAGTTTGAGGAGCTAGCACAAAATCCTGACATTATAATTGCAACGCCTGGTAGGCTTATGCACCTTTTGTCTGAAATTGATGACATGTCGCTGCGCACTGTGGAGTATGTTGTTTTTGATGAGGCAGATTGTTTATTCGGCATGGGTTTTGCTCAGCAATTGCATCAAATTCTTACGCAGCTAGGTGAGAATCGTCAAACCTTGCTTTTCAGTGCCACTTTACCTAGTGCCCTTGCTGAATTTGCTAAGGCTGGACTGCGTGACCCTCAGCTTGTTCGTCTGGATTTGGAAACTAAAATCAGTCCCGACCTGAAGCTTGCCTTTTTCACCTTGAGGCAAGAAGAAAAATATGCAGCATTGTTGTATTTGATTAGGGAGCAAATTAGCTCTGATCAGCAGACACTTATATTTGTATCCACAAAACATCATGTTGAATTTCTTAACACGTTGTTTAGGGAAGAGGGTATCGAGCCATCTGTATGTTATGGTGACATGGATCAAGATGCTCGCAAAATTCATATATCAAGGTTCAGGTCAAGGAAGACAATGCTGTTGATTGTGACAGATATTGCTGCTCGGGGCATAGATATTCCATTACTTGATAATGTTATCAACTGGGACTTCCCCCCCAAGCCTAAAATATTTGTTCATCGAGTTGGAAGGGCTGCAAGAGCCGGTCGCACTGGTACTGCCTATTCTTTTTTGACTTCGGAGGACATGCCATACCTTTTGGATCTTCACCTGTTCCTCTCAAAACCAATCAGAGCTGCTCCAACTGAAGAAGAGGTTCTGCAGGATATGCAGGGAGCATTTTCCAAAATTGACCAGGCAATAGCAAAGGGAGAAACTGTTTATGGTCGATTCCCTCAAAAAGCTTTAGACCTTGTTTCAGACAGAGTTCAGGAAACCATTGACGCTTCTGCTGAACTTGCATCTTTGCAGAAGACATGTCAAAATGCATTCCGTTTATACTCGAAGACAAAACCCTCACCTGCAAAGGAGTCTATTAGAAGAGCAAAAGATTTGCCACGTGAGGGGTTGCATCCAATTTTCAATAATGTATTGGAAACAGGGGAGTTAATGGCACTTGCTTTTTCAGAGCACTTGAAAAAGTTTAGGCCAAAGCAGACTGTTTTGGAGACTGAAGGTGAAGCAGCTAAATCAAAGCATCTACAGGGGCCTGCTGGTCAATGGGTTGATGTGATGAAGAAAAAAAGAGCCATTCATGAGAATATTATAAATTTAGTCCACGACCAGCGCTCTAAGAGTAAGGCAGAAGAGGGGGAAATTCAATTGGATATCACTCCTTCTGTGGAGAAAGGAAAAAAAGCACTGTCTGGTTCTAAGAGAAAGCCACAAAGTTTCAAGGATGAGGAATACTTCATAAGTTCAATACCCCAAAATCATCATATGGAAGCAGGTCTTTCAGTCAGGGCTAAAGAAGACTTTTCTTCAAATAGATTGGAATCAGCTGTCCTCGATCTAGTTGCAGATGACAGTGCTGGCATTCAGAAACAAAAGTCAGTATATCATTGGGATAAGAAAAGTAAAAAGTATATCAAGCTAAACAATGGTGAGCGTGTTGCTGCAAATGGAAAGATAAAGACAGAGGGTGGTGCAAAAGTGAAGGCCAACAAGACTGGTATATATAAGAAGTGGAAAGAACGCTCGCACAATAAGATAGGTGTTAAGGGTATGGATAATGAAGGTGATGCTCATGGATCCATGAGTTTGGCAGGGCATTTCCGAGGCGGTGCCCGGAAATTTAAGGGCAGCAAGAAGCAGCATTCAATGCCAAATGCTCATGTGCGTTCAGAGATCAAAGATTTAGATCAAATCCGAAAGGACAGGCAGAAGAAGGCTGACAAACTTTCATATCTGAAGAGCCAGTCTGGTAAAAAGGGTAAAAAATTTGGTAAAAATGGGAAAAAAGGAAAAGGTGGTGGTGGTGGTGGAGGACATGGAAAGAAAGGAAAGGGAAGGTAA 2406 0.4323 MAKGGALLVSSKAELKHKGKQQKKAKSGGFESLGLSPNIYGGIKRKGYKVPTPIQRKTMPIILSGADVVAMARTGSGKTAAFLVPMLQRLNQHLPQGGVRALILSPTRDLALQTLKFTKELGHFTDLRVSLLVGGDSMESQFEELAQNPDIIIATPGRLMHLLSEIDDMSLRTVEYVVFDEADCLFGMGFAQQLHQILTQLGENRQTLLFSATLPSALAEFAKAGLRDPQLVRLDLETKISPDLKLAFFTLRQEEKYAALLYLIREQISSDQQTLIFVSTKHHVEFLNTLFREEGIEPSVCYGDMDQDARKIHISRFRSRKTMLLIVTDIAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAYSFLTSEDMPYLLDLHLFLSKPIRAAPTEEEVLQDMQGAFSKIDQAIAKGETVYGRFPQKALDLVSDRVQETIDASAELASLQKTCQNAFRLYSKTKPSPAKESIRRAKDLPREGLHPIFNNVLETGELMALAFSEHLKKFRPKQTVLETEGEAAKSKHLQGPAGQWVDVMKKKRAIHENIINLVHDQRSKSKAEEGEIQLDITPSVEKGKKALSGSKRKPQSFKDEEYFISSIPQNHHMEAGLSVRAKEDFSSNRLESAVLDLVADDSAGIQKQKSVYHWDKKSKKYIKLNNGERVAANGKIKTEGGAKVKANKTGIYKKWKERSHNKIGVKGMDNEGDAHGSMSLAGHFRGGARKFKGSKKQHSMPNAHVRSEIKDLDQIRKDRQKKADKLSYLKSQSGKKGKKFGKNGKKGKGGGGGGGHGKKGKGR 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g0466 801 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 14 699 - -
Acco10g0466 801 MobiDBLite consensus disorder prediction 739 769 - -
Acco10g0466 801 CDD DEADc_DDX54 28 233 IPR033517 -
Acco10g0466 801 Pfam DEAD/DEAH box helicase 52 219 IPR011545 GO:0003676|GO:0005524
Acco10g0466 801 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 59 232 IPR014001 -
Acco10g0466 801 Pfam DBP10CT (NUC160) domain 634 695 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Acco10g0466 801 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 384 IPR027417 -
Acco10g0466 801 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 28 56 IPR014014 GO:0003724
Acco10g0466 801 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 256 405 IPR001650 -
Acco10g0466 801 Gene3D - 6 235 IPR027417 -
Acco10g0466 801 SMART ultradead3 47 254 IPR014001 -
Acco10g0466 801 SMART DBP10CT_2 634 696 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Acco10g0466 801 SMART helicmild6 285 366 IPR001650 -
Acco10g0466 801 Pfam Helicase conserved C-terminal domain 255 366 IPR001650 -
Acco10g0466 801 CDD SF2_C_DEAD 251 375 - -
Acco10g0466 801 MobiDBLite consensus disorder prediction 702 801 - -
Acco10g0466 801 MobiDBLite consensus disorder prediction 1 30 - -
Acco10g0466 801 Gene3D - 247 477 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g0466 Acco-ChrAcco10 13175819 13182048 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g0466 30 399 Eukaryotic Initiation Factors Gene Family AT1G72730 33.333 4.72e-60 207