LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco10g0430	ATGCAATCCCCAATTCTTCAAAACCCTCAAGATATCGTCAACTATAACAAGGACGAACTATCTAGCATAGATTATGTCCAAACCACAACTCGCGTGAACGTTCCATTCCCTTGCGATTGCATCGGCGGTGAATTTCTAGGTTACGTATTCAAGTACCCGATTCAAGCAGGGGATAATTATGTGAAGGTTGCGAATCAGAGCTATTCGAATCTCACCACTGCTACGTGCCATGTTTCGAAAGATTATGGGTTGTTCATCACTTACCCGCTAAGACCTGGGGATTCTTTGGATTCAATTGCGAACCAGACGAATCTTGATCGATCGTTGCTGCAGAGGTATAATCCTGGTGCTGATTTTAGCAAAGGGAGTGGTGTGGTTTATATCCCGGGGAAAGGCAAAAATGGTGCCTATGTGCCCCTGCCCACTAGGCCAAAAGGTCTAAAAGGTATGGCTATTGCAGGAGTATCTGCTGGGGCAATAGTTGGGGTTCTGTTATTAACTGTTTGTCCTTATTTTGTGTATTACGGAAAGAAGAAGGAGGAAGAGGAAAAATTGCTTTCAGAATTAGCAGTATACTCTGCTCAATCTGGGAAGGATTCCAATGGTCCTTCGGCTGCTGTTGATACTAGCATCAAAGGCATTACTGTGGACAAATCAGTGGAGTTCTCATATGAAGAAATAGCTCAAGCCACAAATGACTTCAGTAGGGAACATAAAATTGGTCAAGGTGGTTTTGGGGCTGTCTACTATGCAGAGCTGAGAGGCGAGAAAGCTGCAATAAAAAAGATGGAGTCACAAAAATCAAGGGAGTTTCTTGCTGAATTGAAAGTGTTAACACGTGTTTATCACCTAAACCTGGTGCGCTTGATTGGATATTGTGTTAAGAAGGATTCTCTTTTCCTTGTATATGAATATATTGACAATGGAAACTTAAGCCAACACTTGCAAGATTCAGGGAGAGAACCTTTGCCATGGTCCATGCGGGTGCAAATTGCTCTAGATTCAGCCAGAGGTCTTGAATATATTCATGAGCATACTGTGCCTGTATATATTCATCGTGACATAAAGTCAGCTAATATATTGATAGATCGAAACTTCCATGCTAAGGTTGCAGATTTTGGGTTGACTAGGCTCACTGAAGTGGGAAGTTCAGCTCATCCCACTGATAATCTTGCTGGCACATTTGGGAAATATCTTCTGATTAATGGAGATATGCATATGGTAGTGTTTCACCAAAAATTGACGTCTTTGCTTTCGGAGTTGTCCTCTATGAACTTATATCTGCTAAAGAAGCTTTGCTCAGGACTGTTTGAAGAAGCTCTTGGGAAGCCTAATCCAAAGGAACATCTTCAAAAGCTTGTTGATCCTAAGCTTGGTGGTCAATACACAATCGATTCAGTTTACAAGATTGCACAACTAGCCAAAGTGTGCACAGATAGCAACCCAGACCGACGTCCAAGTATGAGATCTATTGTGGTGACTCTAATGACACTTTATCCTACTTCTGTGGGATGTGACATTGTCGCCTTGCAAGAAAATCCAACATTCTCAGATATGTTCTCCGTAAGGTAG	1572	0.4205	MQSPILQNPQDIVNYNKDELSSIDYVQTTTRVNVPFPCDCIGGEFLGYVFKYPIQAGDNYVKVANQSYSNLTTATCHVSKDYGLFITYPLRPGDSLDSIANQTNLDRSLLQRYNPGADFSKGSGVVYIPGKGKNGAYVPLPTRPKGLKGMAIAGVSAGAIVGVLLLTVCPYFVYYGKKKEEEEKLLSELAVYSAQSGKDSNGPSAAVDTSIKGITVDKSVEFSYEEIAQATNDFSREHKIGQGGFGAVYYAELRGEKAAIKKMESQKSREFLAELKVLTRVYHLNLVRLIGYCVKKDSLFLVYEYIDNGNLSQHLQDSGREPLPWSMRVQIALDSARGLEYIHEHTVPVYIHRDIKSANILIDRNFHAKVADFGLTRLTEVGSSAHPTDNLAGTFGKYLLINGDMHMVVFHQKLTSLLSELSSMNLYLLKKLCSGLFEEALGKPNPKEHLQKLVDPKLGGQYTIDSVYKIAQLAKVCTDSNPDRRPSMRSIVVTLMTLYPTSVGCDIVALQENPTFSDMFSVR	523

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco10g0430	523	CDD	LysM	86	118	IPR018392	-
	Acco10g0430	523	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	350	362	IPR008271	GO:0004672\|GO:0006468
	Acco10g0430	523	PANTHER	CHITIN ELICITOR RECEPTOR KINASE 1-RELATED	8	501	IPR044812	GO:0019199\|GO:0045087
	Acco10g0430	523	ProSiteProfiles	Protein kinase domain profile.	234	499	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco10g0430	523	Pfam	Protein tyrosine and serine/threonine kinase	237	382	IPR001245	GO:0004672\|GO:0006468
	Acco10g0430	523	ProSitePatterns	Protein kinases ATP-binding region signature.	240	262	IPR017441	GO:0005524
	Acco10g0430	523	Gene3D	Transferase(Phosphotransferase) domain 1	420	504	-	-
	Acco10g0430	523	Gene3D	Phosphorylase Kinase; domain 1	206	305	-	-
	Acco10g0430	523	SMART	serkin_6	234	497	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco10g0430	523	FunFam	LysM receptor kinase 2	213	305	-	-
	Acco10g0430	523	Gene3D	Transferase(Phosphotransferase) domain 1	306	399	-	-
	Acco10g0430	523	SUPERFAMILY	Protein kinase-like (PK-like)	213	495	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco10g0430	Acco-ChrAcco10	11915555	11924440	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco10g0430	8	519	Receptor kinase-like Gene Family	AT3G21630	49.553	3.82e-171	495

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-I-1	Acco10g0430		PK_Tyr_Ser-Thr	1.3e-34	CL0016