LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco10g0405	ATGGTACCCAGATTTGGGTTTCCACTTCTCTTCTTGTTGATATTATCTCTTTTTCTCAATTCAGAATCAAAGTGTAAGAAAGGATGTGAGTTGGCTCTTGCTTCCTACTACATTTGGGTCGGTCTTCCCAATCTTACTTATCTTCCACAGTTCGTGAAATCCCCAGTTCTTCAAACAACACAGGATATCATCAAATATAAAAATGGCCAAATTTTGTCCGACAACTATGTCGAAACCGGAACTCGTGTGAACGTTCCGTTCCCTTGCGATTGCATCGATAGCGAATTTCTAGGTTACGTATTCGAGTACCAAATTCAGAAAGGAGACACCTATGCGTTGATTGCGAATCAGACTTATGCCAATTTGACCACCGTTTCGATGTTGGAGAGTGCAAATAAGTATTCGCCTGGGAATATTCCTGAATCTGGAACGCTCAATGTGACGGTGAACTGTTCGTGTGGGGATAGCAAAATTTCGAAAGAATATGGGTTGTTCGTCACTTACCCACTTAGAGCTGAGGATTCTTTGGATTCCATTGCCAACATGACGGGGCTTCATCAAGAGTTGCTGCAGAGGTATAATCCTGGTGTTGATTTCAACAAAGGAAGTGGTTTGGTGTATATCCCGGGGAAAGACCAAAATGGTGTCTTTACACCGCTGCCCCATAGCACAAAAGGTCTAAATGGTGGGGCTGTTGCTGCATTATCTGCTGGAGCAGTAGCTGGGTTTCTCTTATTGGCAGGTTGTTTGTATGTTTTATATTACTATAGGAAGGAGAAGAAAAAATTGCTCTCTGAAAAATTAGTAGTCTACTCTGCTCAAACTGGGAATGTTTCCAATGGTCCTCCTGCTGCTGCTAGTATTACTGTGGAGAAGTCAGTGGAATTCTCATATGAAGAACTAGCTCGAGCGACACACAGCTTTAGTATGGCAAATAAAATTGGTGAAGGTGGTTTTGGGGCTGTCTACTATGCGGAGCTGAGAGGCGAGAAAGCTGCAGTTAAAAAGATGAATTCACAAGATACGAAAGAGTTTCTTGCTGAATTGAAAGTGTTGGCACATGTTCATCACCTGAACTTGGTACGCTTGATTGGATATTGTGTTAAGAAGCATTTTCTTTTCCTTGTATATGAATATATTGACAATGGAAACATAGACGAACACTTACGAGGTCCAGGGAGAGAACCCTTGCCATGGTCAATGCGAGTGCGAATTGCTCTGGATTCAGCCAGAGGTCTTGACTACATTCATGAGCATACAGTGCCCACATACGTTCATCGTGACATAAAGCCAGCTAACATATTGATAGACCGAGACTTCCATGCAAAGGTTGCAGATTTTGGGTTAACCAAACTCATTGAAGTGGGAAGTTCATCATATCTCTCTGAACATCTTGCAGGAACATTTGGTTATATACCACACCAGAATGATGGGAAAGCTGTGCTCAGTGTTGGTGAAGCTGGTTCTGAAGCAAAAACCCTTGTCTCTTTGTTTCAAGAAGCTCTTGAGCAGCCTAATCCTGAAGAACATCTTCTAAAACTTGTTGATCCCAGGCTTGAAGGCGAATATACATTCGATTCAATTTACAAGATGGTCCAACTAGCCAAGGCGTGCACACAGGAAAAACCAGACCGACGTCCTAGTATGAGATCTGTTGTGGTGTCTCTAATGACACTCTTATCTTCTATGGAATAG	1695	0.4236	MVPRFGFPLLFLLILSLFLNSESKCKKGCELALASYYIWVGLPNLTYLPQFVKSPVLQTTQDIIKYKNGQILSDNYVETGTRVNVPFPCDCIDSEFLGYVFEYQIQKGDTYALIANQTYANLTTVSMLESANKYSPGNIPESGTLNVTVNCSCGDSKISKEYGLFVTYPLRAEDSLDSIANMTGLHQELLQRYNPGVDFNKGSGLVYIPGKDQNGVFTPLPHSTKGLNGGAVAALSAGAVAGFLLLAGCLYVLYYYRKEKKKLLSEKLVVYSAQTGNVSNGPPAAASITVEKSVEFSYEELARATHSFSMANKIGEGGFGAVYYAELRGEKAAVKKMNSQDTKEFLAELKVLAHVHHLNLVRLIGYCVKKHFLFLVYEYIDNGNIDEHLRGPGREPLPWSMRVRIALDSARGLDYIHEHTVPTYVHRDIKPANILIDRDFHAKVADFGLTKLIEVGSSSYLSEHLAGTFGYIPHQNDGKAVLSVGEAGSEAKTLVSLFQEALEQPNPEEHLLKLVDPRLEGEYTFDSIYKMVQLAKACTQEKPDRRPSMRSVVVSLMTLLSSME	564

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco10g0405	564	PANTHER	CHITIN ELICITOR RECEPTOR KINASE 1-RELATED	480	563	IPR044812	GO:0019199\|GO:0045087
	Acco10g0405	564	Gene3D	Transferase(Phosphotransferase) domain 1	380	476	-	-
	Acco10g0405	564	Gene3D	Transferase(Phosphotransferase) domain 1	484	564	-	-
	Acco10g0405	564	ProSitePatterns	Protein kinases ATP-binding region signature.	314	336	IPR017441	GO:0005524
	Acco10g0405	564	FunFam	LysM receptor kinase 2	287	379	-	-
	Acco10g0405	564	Pfam	Protein tyrosine and serine/threonine kinase	310	459	IPR001245	GO:0004672\|GO:0006468
	Acco10g0405	564	SMART	serkin_6	308	558	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco10g0405	564	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	424	436	IPR008271	GO:0004672\|GO:0006468
	Acco10g0405	564	Pfam	LysM domain	103	139	IPR018392	-
	Acco10g0405	564	SUPERFAMILY	Protein kinase-like (PK-like)	288	556	IPR011009	-
	Acco10g0405	564	ProSiteProfiles	Protein kinase domain profile.	308	560	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco10g0405	564	Gene3D	Phosphorylase Kinase; domain 1	282	379	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco10g0405	Acco-ChrAcco10	11280659	11307330	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco10g0405	12	562	Receptor kinase-like Gene Family	AT3G21630	51.520	0.0	575

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LysM	Acco10g0405		PK_Tyr_Ser-Thr	9.5e-33	CL0016