Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g0386 ATGAACAACAATCTGGCATTTCTTGCAAGAACTGTTGCAACAAAGTTTCATAGTCCATCTCCATTGCGAATCTATTGTTCATCATCCTCAGAGTCTCCTCCTCCTTCCAGCAATAAACTCTTTGTCGGAGGGTTGTCATGGTCCGTGGGTGAGAAGTCCCTCAAAGATGCTTTCTCTTCATTTGGTGAAGTCACTGAAGTGAGGATAGCATATGATAAAGACAGTGGTAGGTCTAGAGGGTTTGGGTTTGTCATATTTTCAGATGAAGATAATGCCATAACTGCAAAAGACGCAATGGATGGCAAGGCACTGTTAGGAAGACCCTTGAGAATAAATTTTGCTCTTGAGAAGGTCCGTGGGGGACCTGTTGTAGTTCCTCGGATCTCAGATATTGGACGCAGAGACTTCTAG 411 0.438 MNNNLAFLARTVATKFHSPSPLRIYCSSSSESPPPSSNKLFVGGLSWSVGEKSLKDAFSSFGEVTEVRIAYDKDSGRSRGFGFVIFSDEDNAITAKDAMDGKALLGRPLRINFALEKVRGGPVVVPRISDIGRRDF 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g0386 136 SMART rrm1_1 39 112 IPR000504 GO:0003723
Acco10g0386 136 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 116 IPR000504 GO:0003723
Acco10g0386 136 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 26 117 - -
Acco10g0386 136 Gene3D - 26 133 IPR012677 -
Acco10g0386 136 SUPERFAMILY RNA-binding domain, RBD 27 122 IPR035979 GO:0003676
Acco10g0386 136 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 110 IPR000504 GO:0003723
Acco10g0386 136 CDD RRM2_NsCP33_like 39 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g0386 Acco-ChrAcco10 10813797 10816297 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g0386 36 117 C2H2 Transcription Factor Family AT2G19380 36.585 2.27e-12 61.2